New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6172767 =	45 (1.070)	4 (0.100)	4/236	NT	7.3%	coding (315/777 nt)	PP_5410	DeoR family transcriptional regulator
	?	NC_002947	6172834 =	61 (1.580)					coding (248/777 nt)	PP_5410	DeoR family transcriptional regulator

GCCCTGGAACGATTCGGAATGCGGGTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCAC  >  NC_002947/6172620‑6172912                                                                                                                                                    |                                                                                                                                                  gCCCTGGAACGATTCGGAATGCGGGTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCAtt                                                                                                                                                   <  2:121265/148‑1 (MQ=255) ctcggaagtgaccattcgcaaagacctcgccgccttggaaaccaacggcttgttgttacgccgctacggtggtgcagttccggtaacgcaatatttgaaaggttaaacggcacaacccgtctcttactataaaaatgacaatgcgcgtt                                                                                                                                                  <  8:219672‑M1/2‑2 (MQ=255)   ccTGGAACGATTCGGAATGCGGGTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGACCCAGTTCGGGGATCATTgcc                                                                                                                                                >  6:118026/1‑149 (MQ=255)      aagtgaccattcgcaaagacctcgccgccttggaaacaaacggcttgttgttacgccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTgccgcc                                                                                                                                             <  2:99726‑M1/7‑1 (MQ=255)       gAACGATTCGGAATGCGGGTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGccgccg                                                                                                                                            >  4:165349/1‑149 (MQ=255)         tgaccattcgcaaagacctcgccgccttggaaaccaacggcttgttgttacgccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCgtg                                                                                                                                          >  6:130973‑M1/140‑149 (MQ=255)           accattcgcaaagacctcgccgccttggaaaccaacggcttgttgttacgccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCgtgg                                                                                                                                         >  4:253692‑M1/138‑148 (MQ=255)                       gggTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTc                                                                                                                            >  7:13583/1‑149 (MQ=255)                         gTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCTCCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCga                                                                                                                          >  3:247930/1‑149 (MQ=255)                             cAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTgccgcc                                                                                                                                             <  7:58645/126‑1 (MQ=255)                             cAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTgccgcc                                                                                                                                             >  8:58645/1‑126 (MQ=255)                              aGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTGgaggat                                                                                                                      >  7:133031/1‑148 (MQ=255)                                gggcaaCCTGTCATCAGCAGCACAGGGTCGTGTTCGAGGTCGCAGATTGCACGGTCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCTCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAAt                                                                                                                   <  5:322/144‑1 (MQ=255)                                   ttggaaaccaacggcttgttgttacgccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATgcg                                                                                                                <  6:114539‑M1/36‑1 (MQ=255)                                       cGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCa                                                                                                            >  4:140563/1‑149 (MQ=255)                                        ggTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCAGTGGTGCTGCCGCTGTCGATCATAATGCGCGCAt                                                                                                           >  1:211217/1‑149 (MQ=255)                                            aacggcttgttgttatgccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTc                                                                                                       <  5:204211‑M1/45‑1 (MQ=255)                                              cagcagCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTcgc                                                                                                     >  2:7829/1‑149 (MQ=255)                                               agcagcCCCGGCTCGTGTTCGAGGTCGCAGATTGCACGCGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTcgc                                                                                                     <  6:223878/148‑1 (MQ=255)                                                             ccgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCAcg                                                                                       >  6:204211‑M1/88‑148 (MQ=255)                                                              cgctacggtggtgctgtgccggtaccgcaagagttgctcggtgaaccggcacaacccgtctcttcctataaaaaggccattgcgcgTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCAcggc                                                                                     >  5:114539‑M1/87‑149 (MQ=255)                                                                          cAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCa                                                                           >  8:58921/1‑147 (MQ=255)                                                                          cAGATTGCACGGGCCACATTGAGCGAATTGGGCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCa                                                                           <  7:58921/147‑1 (MQ=255)                                                                              ttGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGc                                                                      <  8:13583/148‑1 (MQ=255)                                                                              atGCACGGGCCACATTGAGCGAATAGGACATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGcc                                                                     <  8:181298/148‑1 (MQ=255)                                                                               tGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCt                                                                    >  5:228550/1‑149 (MQ=255)                                                                                  aCGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCtttt                                                                 >  6:133185/1‑149 (MQ=255)                                                                                      gCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTtata                                                             <  6:100777/149‑1 (MQ=255)                                                                                      gCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTta                                                               >  5:94753/1‑147 (MQ=255)                                                                                      gCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTta                                                               >  3:113435/1‑147 (MQ=255)                                                                                      gCCACATTGAGCGAATTGGTCATCACCACCAGGCCTCGCTGGCGCCCCAGTTCGGCGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCAACGGCGGCACGCGCAATGGCCTTTTta                                                               >  6:10996/1‑147 (MQ=255)                                                                                        gacaTTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAg                                                            >  6:51962/2‑148 (MQ=255)                                                                                             tGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGaa                                                         >  8:20270/1‑146 (MQ=255)                                                                                              gAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAgaga                                                     >  8:136222/1‑149 (MQ=255)                                                                                                        gTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGGCGCTGTCGATGATAATGAGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGc                                           >  5:188099/1‑149 (MQ=255)                                                                                                         tcatcaCCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGcc                                          >  3:122982/1‑149 (MQ=255)                                                                                                           atcaCCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCgg                                        >  2:83453/1‑149 (MQ=255)                                                                                                           atcaCCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCgg                                        <  6:228550/149‑1 (MQ=255)                                                                                                                caccaGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAAt                                                                         >  2:125060/1‑111 (MQ=255)                                                                                                                caccaGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAAt                                                                         <  1:125060/111‑1 (MQ=255)                                                                                                                caccaGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCAc                                   >  1:99726/1‑149 (MQ=255)                                                                                                                    aGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAg                               <  8:133031/149‑1 (MQ=255)                                                                                                                      gCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGc                              >  4:222704/1‑148 (MQ=255)                                                                                                                        ctggctggCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCACAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAAc                           <  5:17268/149‑1 (MQ=255)                                                                                                                               gcgcCCCAGTTCGGGGATAATTGCCGACGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGACGGTTCACCGAGCAACTCTTGc                     <  2:211217/148‑1 (MQ=255)                                                                                                                                   cccAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGAAATGGCCTTTTTATAGGAAGAGACGGGTTGTGACGGTTCACCGAGCAACTCTTGCGGTAc                <  1:7829/149‑1 (MQ=255)                                                                                                                                    ccAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGtt                                               <  8:66397/117‑1 (MQ=255)                                                                                                                                    ccAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGtt                                               >  7:66397/1‑117 (MQ=255)                                                                                                                                    ccAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTAcc               <  5:10996/149‑1 (MQ=255)                                                                                                                                     cAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCg              >  7:219672/1‑149 (MQ=255)                                                                                                                                     cAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCg              >  7:141568/1‑149 (MQ=255)                                                                                                                                     cAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCg              >  2:263272/1‑149 (MQ=255)                                                                                                                                       gTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGc            <  3:165349/149‑1 (MQ=255)                                                                                                                                       gTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGc            <  1:263272/149‑1 (MQ=255)                                                                                                                                           ggggATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAg        <  6:94753/149‑1 (MQ=255)                                                                                                                                                tCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGcacca   <  4:122982/149‑1 (MQ=255)                                                                                                                                                  aTTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGcaccac  <  5:92961/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCCCTGGAACGATTCGGAATGCGGGTCCCAGGTGCCACCGGTCATCAGCAGCACCGGCTCGTGTTCGAGGTCGCAGATTGCACGGGCCACATTGAGCGAATTGGTCATCACCACCAGGCCTGGCTGGCGCCCCAGTTCGGGGATCATTGCCGCCGTGGTGCTGCCGCTGTCGATGATAATGCGCGCATGTTCGCGGATACGCCCCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCAC  >  NC_002947/6172620‑6172912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.