New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 21956	37 (0.880)	3 (0.080)	3/244	NT	7.9%	coding (1759/1917 nt)	PP_0016	hypothetical protein
	?	NC_002947	= 21972	35 (0.880)					coding (1775/1917 nt)	PP_0016	hypothetical protein

GTTAAGCCTCAAGCCATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGATTCAGGCATGTGGG  >  NC_002947/21809‑22104                                                                                                                                                    |                                                                                                                                                     gTTAAGCCTCAAGCCATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAAcgc                                                                                                                                                     >  1:144460/1‑149 (MQ=255)        cTCAAGCCATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTACGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGc                                                                                                                                              >  4:78187/1‑149 (MQ=255)           aaGCCATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCgg                                                                                                                                           <  3:146779/149‑1 (MQ=255)             gacATCGACAGATTCAGGCGTTGCTATATCTAGGGACCGGAGATTGCGGTCTATTTGGGGAAGTCGACCAGTGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCCGCTTGCCGGCa                                                                                                                                         <  8:110491/147‑1 (MQ=255)              ccATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAg                                                                                                                                        >  8:55714/1‑149 (MQ=255)               caacGACAGATTCATGCGTCGATATATCTTCCGACCGGAGATAGCCGTGTATATGCGCAAGACGACCAGGGACGCGGACAAGCACCTTAGGGAGGACATGTAACGCCCCGTTGCGGGGCCATCCATTCCAAAAGCGGCATGCCGGCac                                                                                                                                        >  6:67695/4‑147 (MQ=255)                 tCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTAc                                                                                                                                     <  4:119531‑M2/149‑2 (MQ=255)                      aGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTAcgtttg                                                                                                                                >  7:82796‑M2/1‑143 (MQ=255)                       gATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTAcgtttgg                                                                                                                               >  7:55714‑M2/1‑142 (MQ=255)                         ttCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTCGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTAcgtttgg                                                                                                                               <  8:115595‑M2/147‑8 (MQ=255)                         ttCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTCGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTAcgtttgg                                                                                                                               >  7:115595‑M2/1‑140 (MQ=255)                            aGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTaag                                                                                                                          <  2:144460/149‑1 (MQ=255)                            aGGCGTGGCTATATCTTGGGACCGGAGATTACGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTaag                                                                                                                          <  3:78187/149‑1 (MQ=255)                              gCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTaag                                                                                                                          >  3:3702/1‑147 (MQ=255)                               cGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTaagaag                                                                                                                       <  6:254397/149‑1 (MQ=255)                                gTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGtactgccggcaagccgcgtttggaatggatgg                                                                                                                      <  1:71809‑M1/149‑33 (MQ=255)                                   gCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCaaa                                                                                                                   <  8:231232/149‑1 (MQ=255)                                     tataTCTTGGGACCGGTGATTGCTGTGTATTTGGGGAAGTCGACCATGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCaa                                                                                                                    <  8:140902/146‑1 (MQ=255)                                     tataTCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCGGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCaa                                                                                                                    >  7:140902/1‑146 (MQ=255)                                               gACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCt                                                                                                              <  2:47605/142‑1 (MQ=255)                                               gACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCt                                                                                                              >  1:47605/1‑142 (MQ=255)                                               gACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGAt                                                                                                       >  8:156958/1‑149 (MQ=255)                                                aCCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGAtt                                                                                                      <  3:10014/149‑1 (MQ=255)                                                 ccGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTa                                                                                                     <  3:119531/149‑1 (MQ=255)                                                  cGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGa                                                                                                            >  1:54130/1‑141 (MQ=255)                                                  cGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGa                                                                                                            <  2:54130/141‑1 (MQ=255)                                                   ggAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTAcc                                                                                                   >  1:203871/1‑149 (MQ=255)                                                            ggTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTg                                                                                          <  7:156958/149‑1 (MQ=255)                                                                        gAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGtactgccggcaagccgcgtttggaa                                                                                                                             <  8:60944‑M1/102‑26 (MQ=255)                                                                        gAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGtactgccggcaagccgcgtttggaa                                                                                                                             >  7:60944‑M1/1‑77 (MQ=255)                                                                             cGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATcgac                                                                         >  4:230736/1‑149 (MQ=255)                                                                              gACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATcgac                                                                         >  7:226334/1‑148 (MQ=255)                                                                                    ggAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTg                                                                  <  8:226334/149‑1 (MQ=255)                                                                                               aGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACg                                                       >  8:178117/1‑149 (MQ=255)                                                                                                           aGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCcaca                                           <  4:3702/149‑1 (MQ=255)                                                                                                             gCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACAcc                                         >  7:250784/1‑149 (MQ=255)                                                                                                              ccAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCacac                                          >  1:194713/1‑147 (MQ=255)                                                                                                              ccAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCacac                                          <  2:194713/147‑1 (MQ=255)                                                                                                                aGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGttt                                                    <  7:64214/135‑1 (MQ=255)                                                                                                                aGGTTTCGCCCCGTTGCGGGGCCATCCATTCAAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGttt                                                    >  8:64214/1‑135 (MQ=255)                                                                                                                  gTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGATGCAAAAAGCTGATCGATTCCCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCg                                    >  7:7398/1‑149 (MQ=255)                                                                                                                     tCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCt                                  <  3:230736/148‑1 (MQ=255)                                                                                                                                     ccatccatTCCAAACGCGGCTTGCCGGCAGTAcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccaaatacaccgcaatctccggtcccaagatatagccac                 <  1:71809‑M2/149‑118 (MQ=255)                                                                                                                                          catTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGATTc             <  2:203871/148‑1 (MQ=255)                                                                                                                                            ttCCAAACGCGGCTTGCCGGCAGTAcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttc                                                         >  7:60944‑M2/1‑25 (MQ=255)                                                                                                                                            ttCCAAACGCGGCTTGCCGGCAGTAcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttc                                                         <  8:60944‑M2/102‑78 (MQ=255)                                                                                                                                              ccAAACGtactgccggcaagccgcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccgaatacaccgcaatctccggtcccaagatatagccacgcctgaa          <  8:115595‑M1/147‑141 (MQ=255)                                                                                                                                              ccAAACGtactgccggcaagccgcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccgaatacaccgcaatctccggtcccaagatatagccacgcctgaa          >  7:115595‑M1/1‑7 (MQ=255)                                                                                                                                              ccAAACGtactgccggcaagccgcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccaaatacaccgcaatctccggtcccaagatatagccacgcctgaatc        >  7:55714‑M1/1‑7 (MQ=255)                                                                                                                                              ccAAACGCGGCTTGCCGGCAGTACGTGTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGATTCAGGc         <  8:250784/148‑1 (MQ=255)                                                                                                                                               cAAACGtactgccggcaagccgcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccaaatacaccgcaatctccggtcccaagatatagccacgcctgaatct       >  7:82796‑M1/1‑6 (MQ=255)                                                                                                                                               cAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGa                <  7:57238/140‑1 (MQ=255)                                                                                                                                               cAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGa                >  8:57238/1‑140 (MQ=255)                                                                                                                                                 aaCGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGATTCAGGCAtgt     >  4:249038/1‑149 (MQ=255)                                                                                                                                                    gtactgccggcaagccgcgtttggaatggatggccccgcaacggggcgaaacctggcctcccaaaggtgcttgaacgcctccctggtcgacttccccaaatacaccgcaatctccggtcccaagatatagccacgcctgaatctgtcga  <  4:119531‑M1/149‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTTAAGCCTCAAGCCATCGACAGATTCAGGCGTGGCTATATCTTGGGACCGGAGATTGCGGTGTATTTGGGGAAGTCGACCAGGGAGGCGTTCAAGCACCTTTGGGAGGCCAGGTTTCGCCCCGTTGCGGGGCCATCCATTCCAAACGCGGCTTGCCGGCAGTACGTTTGGGTAAGAAGCAAAAAGCTGATCGATTACCTCGCAAGTGAAGCCGCCCAGATCGACGATCCTGAAGCCATCACGTTTTTATCCACACCGATCGCTCAGCCTCGTGATTGCCGATTCAGGCATGTGGG  >  NC_002947/21809‑22104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.