New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 62692	34 (0.810)	3 (0.080)	3/242	NT	7.6%	coding (937/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
	?	NC_002947	= 62746	41 (1.040)					coding (991/1269 nt)	PP_0053	sulfide:quinone oxidoreductase

ACGTGGTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTG  >  NC_002947/62546‑62838                                                                                                                                                   |                                                                                                                                                   aCGTGGTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAAt                                                                                                                                                  <  3:201125/149‑1 (MQ=255)    tGGTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGc                                                                                                                                                >  1:8495/1‑148 (MQ=255)    tGGTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGc                                                                                                                                                >  3:30625/1‑148 (MQ=255)      gTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCaa                                                                                                                                             <  1:270240/149‑1 (MQ=255)           gCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGAccg                                                                                                                                        >  5:136438/1‑149 (MQ=255)                     gcgcCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTgcggc                                                                                                                              >  6:215789/1‑149 (MQ=255)                      cgcCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTgcggcg                                                                                                                             >  5:239845/1‑149 (MQ=255)                                cATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAcattgttggcgaccaccggtgcctgcttgcgcg                                                                                                                   >  3:28338‑M1/1‑116 (MQ=255)                                   tCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGc                                                                                                                                                >  4:100857/1‑117 (MQ=255)                                   tCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGc                                                                                                                                                <  3:100857/117‑1 (MQ=255)                                    cgcgAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCAcc                                                                                                               >  2:189083/1‑149 (MQ=255)                                     gcgAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCAcc                                                                                                               <  2:8495/148‑1 (MQ=255)                                       gAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTACGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCggt                                                                                                            >  1:69884/1‑149 (MQ=255)                                           gCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTc                                                                                                        <  1:189083/149‑1 (MQ=255)                                           gCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTc                                                                                                        <  4:30625/149‑1 (MQ=255)                                                  ggCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCcaa                                                                                                   <  2:69884/147‑1 (MQ=255)                                                   gCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCcaaca                                                                                                 <  6:136438/148‑1 (MQ=255)                                                    cGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAAt                                                                                               >  7:22223/1‑149 (MQ=255)                                                            tCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCcaa                                                                                                   <  5:143905/137‑1 (MQ=255)                                                            tCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCcaa                                                                                                   >  6:143905/1‑137 (MQ=255)                                                              cGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggt                                                                                       >  6:239845‑M2/1‑140 (MQ=255)                                                                gCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGGGACGTGGCTAACACCAGCAcattgttggcgaccaccggtgcctgcttgcgcgccgcagcggcggtcttggcattgctggtgtta                                                                                   <  5:42610‑M1/149‑66 (MQ=255)                                                                 cTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGgcgc                                                                                  <  5:251531/149‑1 (MQ=255)                                                                   gggTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTg                                                                                >  5:53415/1‑149 (MQ=255)                                                                     gTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAcattgttggcgaccaccggtgcctgcttgcgcgccgcagcggcggtcttggcattgctggtgttagccac                                                                              <  4:28338‑M1/149‑71 (MQ=255)                                                                              gATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtg                                                                                      >  8:150768‑M2/1‑124 (MQ=255)                                                                              gATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtg                                                                                      <  7:150768‑M2/132‑9 (MQ=255)                                                                                  cGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGAc                                                                  <  5:119268/148‑1 (MQ=255)                                                                                   gCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTgg                                                                               >  7:42084/1‑134 (MQ=255)                                                                                   gCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTgg                                                                               <  8:42084/134‑1 (MQ=255)                                                                                         ccTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGcc                                                           >  1:239642/1‑148 (MQ=255)                                                                                         ccTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGcc                                                           >  7:178274/1‑148 (MQ=255)                                                                                                  tCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTacgacg                                                 >  2:154949/1‑149 (MQ=255)                                                                                                           cacCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACCACGGCTATGGc                                         >  6:51814/1‑148 (MQ=255)                                                                                                              cAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTg                                                                       <  2:37817/115‑1 (MQ=255)                                                                                                                           cTAGGTGACGTGGCTAACACCAGCAATGCCAAGTCCGCCGCTGGGGCGCGCAAGGAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGGTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGt                        <  1:64134/149‑1 (MQ=255)                                                                                                                              ggTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTc                       >  2:271003/1‑147 (MQ=255)                                                                                                                               gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATgg                                          <  1:252775/127‑1 (MQ=255)                                                                                                                               gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATgg                                          >  2:252775/1‑127 (MQ=255)                                                                                                                               gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAg                    >  8:98520/1‑149 (MQ=255)                                                                                                                                  aCGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAgcgc                 >  4:230410/1‑149 (MQ=255)                                                                                                                                    gTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaac               <  4:28338‑M2/149‑80 (MQ=255)                                                                                                                                         tAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtgttagccacgtcccctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaacccagc          <  5:42610‑M2/149‑85 (MQ=255)                                                                                                                                         tAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGc              >  2:122242/1‑145 (MQ=255)                                                                                                                                           acacCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGa          <  1:200330/147‑1 (MQ=255)                                                                                                                                            cacCAGCAcattgttggcgaccaccggtgcctgcttgcgcgccgcagcggcggtcttggcattgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatc                        <  7:150768‑M1/132‑125 (MQ=255)                                                                                                                                            cacCAGCAcattgttggcgaccaccggtgcctgcttgcgcgccgcagcggcggtcttggcattgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatc                        >  8:150768‑M1/1‑8 (MQ=255)                                                                                                                                             acCAGCAcattgttggcgaccaccggtgcctgcttgcgcgccgcagcggcggtcttggcattgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaacccagccg        >  6:239845‑M1/1‑7 (MQ=255)                                                                                                                                             acCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGt      >  2:260545/1‑149 (MQ=255)                                                                                                                                              ccAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTc     <  6:53415/149‑1 (MQ=255)                                                                                                                                                 gCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTg  <  8:178274/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   ACGTGGTACCGCCACAGGTGGCGCCAGACTTCATTCGCGAAAGCCCCTTGGCGGATAGCTCCGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTG  >  NC_002947/62546‑62838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.