New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 62692	34 (0.810)	3 (0.080)	3/242	NT	7.6%	coding (937/1269 nt)	PP_0053	sulfide:quinone oxidoreductase
	?	NC_002947	= 62746	41 (1.040)					coding (991/1269 nt)	PP_0053	sulfide:quinone oxidoreductase

CGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTGGTTA  >  NC_002947/62607‑62889                                                                                                                                            |                                                                                                                                                cGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggt                                                                                                                                          >  6:239845‑M2/1‑140 (MQ=255)    cTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGgcgc                                                                                                                                     <  5:251531/149‑1 (MQ=255)      gggTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTg                                                                                                                                   >  5:53415/1‑149 (MQ=255)                 gATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtg                                                                                                                                         <  7:150768‑M2/132‑9 (MQ=255)                 gATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtg                                                                                                                                         >  8:150768‑M2/1‑124 (MQ=255)                     cGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGAc                                                                                                                     <  5:119268/148‑1 (MQ=255)                      gCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTgg                                                                                                                                  <  8:42084/134‑1 (MQ=255)                      gCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTgg                                                                                                                                  >  7:42084/1‑134 (MQ=255)                            ccTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGcc                                                                                                              >  7:178274/1‑148 (MQ=255)                            ccTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGcc                                                                                                              >  1:239642/1‑148 (MQ=255)                                     tCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTacgacg                                                                                                    >  2:154949/1‑149 (MQ=255)                                              cacCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACCACGGCTATGGc                                                                                            >  6:51814/1‑148 (MQ=255)                                                 cAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTg                                                                                                                          <  2:37817/115‑1 (MQ=255)                                                              cTAGGTGACGTGGCTAACACCAGCAATGCCAAGTCCGCCGCTGGGGCGCGCAAGGAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGGTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGt                                                                           <  1:64134/149‑1 (MQ=255)                                                                 ggTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTc                                                                          >  2:271003/1‑147 (MQ=255)                                                                  gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATgg                                                                                             >  2:252775/1‑127 (MQ=255)                                                                  gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATgg                                                                                             <  1:252775/127‑1 (MQ=255)                                                                  gTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAg                                                                       >  8:98520/1‑149 (MQ=255)                                                                     aCGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAgcgc                                                                    >  4:230410/1‑149 (MQ=255)                                                                       gTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaac                                                                  <  4:28338‑M2/149‑80 (MQ=255)                                                                            tAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtgttagccacgtcccctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaacccagc                                                             <  5:42610‑M2/149‑85 (MQ=255)                                                                            tAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGc                                                                 >  2:122242/1‑145 (MQ=255)                                                                              acacCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGa                                                             <  1:200330/147‑1 (MQ=255)                                                                                acCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGt                                                         >  2:260545/1‑149 (MQ=255)                                                                                 ccAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTc                                                        <  6:53415/149‑1 (MQ=255)                                                                                    gCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTg                                                     <  8:178274/149‑1 (MQ=255)                                                                                       aTGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGcc                                                  >  7:83919/1‑149 (MQ=255)                                                                                           cAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGAc                                                                                                                     >  8:70353/1‑78 (MQ=255)                                                                                           cAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGAc                                                                                                                     <  7:70353/78‑1 (MQ=255)                                                                                           cAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGt                                              >  5:251683/1‑149 (MQ=255)                                                                                              gACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCa                                           <  8:83919/149‑1 (MQ=255)                                                                                               aCCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCAc                                          <  1:260545/149‑1 (MQ=255)                                                                                                 cgccgcTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCAcc                                         >  7:171229/1‑148 (MQ=255)                                                                                                  gccgcTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTa                                       >  3:155134/1‑149 (MQ=255)                                                                                                  gccgcTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTa                                       >  3:151805/1‑149 (MQ=255)                                                                                                     gcTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATgg                                    <  7:98520/149‑1 (MQ=255)                                                                                                           gcgcgcAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCaa                              <  5:215789/149‑1 (MQ=255)                                                                                                            cgcgcAAGCAGGCACCGGTGGTCGCCAACAATGtgctggtgttagccacgtcacctagggcatgaacgttggtgtatttgcgatggcgcagggtatgcggatcgacgtcaacccagccggagctatccgccaaggggctttcgcgaatg                             >  3:28338‑M2/1‑33 (MQ=255)                                                                                                              cgcAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCt                           <  8:22223/149‑1 (MQ=255)                                                                                                                     aGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCg                    <  3:230410/149‑1 (MQ=255)                                                                                                                           cGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTc              <  1:122242/149‑1 (MQ=255)                                                                                                                                   gCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCGACTg      >  3:128916/1‑149 (MQ=255)                                                                                                                                   gCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTg      <  2:239642/149‑1 (MQ=255)                                                                                                                                    ccAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCGCGACTgg     <  4:128916/149‑1 (MQ=255)                                                                                                                                    ccAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTgg     <  1:271003/149‑1 (MQ=255)                                                                                                                                     caacaaTGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTGGt    <  8:171229/149‑1 (MQ=255)                                                                                                                                      aacaaTGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGGTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTGGt    >  6:78010/1‑148 (MQ=255)                                                                                                                                       acaaTGTGCCGGGGGGGGGGGGCACGGGGGCGACCCTTGGCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTGGTTa  <  3:92342/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                CGGCTGGGTTGACGTCGATCCGCATACCCTGCGCCATCGCAAATACACCAACGTTCATGCCCTAGGTGACGTGGCTAACACCAGCAATGCCAAGACCGCCGCTGCGGCGCGCAAGCAGGCACCGGTGGTCGCCAACAATGTGCTGGTGGCGCTGGGCAGGCTGGCGACCTTGGCCCAGTACGACGGCTATGGCTCGTGCCCGCTTACCGTCGAGCGCGGCAAGATCGTCCTGGCCGAGTTCACCTATGGCGGCAAGCTGGCCCCGAGCTTCCCCAACTGGTTA  >  NC_002947/62607‑62889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.