New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 446004	41 (0.970)	4 (0.100)	4/248	NT	9.0%	coding (690/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
	?	NC_002947	= 446076	41 (1.010)					coding (762/1806 nt)	PP_0368	acyl‑CoA dehydrogenase

CCGAGCCACAGGCCGACGGCAGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGC  >  NC_002947/445856‑446151                                                                                                                                                     |                                                                                                                                                    ccGAGCCACAGGCCGACGGCAGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTC                                                                                                                                                     <  4:119893‑M1/149‑1 (MQ=255)        acaGGCCGACGGCAGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGGCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGc                                                                                                                                              <  5:221834/149‑1 (MQ=255)          aGGCCGACGGCAGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGcc                                                                                                                                             >  5:177176/1‑148 (MQ=255)                     aGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGcc                                                                                                                                 <  1:208172/149‑1 (MQ=255)                             aGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAATGcc                                                                                                                          >  8:152803/1‑148 (MQ=255)                                       aCCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGccc                                                                                                                                <  4:88827/132‑1 (MQ=255)                                       aCCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGccc                                                                                                                                >  3:88827/1‑132 (MQ=255)                                         cAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTgg                                                                                                             <  7:139589/149‑1 (MQ=255)                                          aaGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCAAATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTggg                                                                                                            >  1:201868/1‑149 (MQ=255)                                           aGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGc                                                                                                           >  3:84466/1‑149 (MQ=255)                                                    tttCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCgatcgagccgcagctcacgccgttgcgctcgcccacgccgccctcggcgtt                                                                                                  >  3:154170‑M1/1‑98 (MQ=255)                                                         gCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGt                                                                                             >  4:257638/1‑149 (MQ=255)                                                           cGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGt                                                                                             >  8:98883/1‑147 (MQ=255)                                                           cGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGt                                                                                             <  7:98883/147‑1 (MQ=255)                                                            ggTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAg                                                                                          <  2:201868/149‑1 (MQ=255)                                                            ggTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAg                                                                                          <  4:221907/149‑1 (MQ=255)                                                                   aCGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGc                                                                                   >  2:110533/1‑149 (MQ=255)                                                                     gACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCtc                                                                                 >  4:153078/1‑149 (MQ=255)                                                                       cATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCaa                                                                                                   >  8:98745/1‑129 (MQ=255)                                                                       cATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCaa                                                                                                   <  7:98745/129‑1 (MQ=255)                                                                       cATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCtcga                                                                               <  7:186931/149‑1 (MQ=255)                                                                          ggCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCgg                                                                                    >  3:75033/1‑141 (MQ=255)                                                                          ggCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCgg                                                                                    <  4:75033/141‑1 (MQ=255)                                                                            ccGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTg                                                                                       >  1:37543/1‑136 (MQ=255)                                                                            ccGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTg                                                                                       <  2:37543/136‑1 (MQ=255)                                                                            ccGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaa                                                                          >  6:177176‑M2/1‑146 (MQ=255)                                                                                   caTCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAacac                                                                       >  3:150336/1‑145 (MQ=255)                                                                                       gTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCgatcgagccgcagctcacgccgttgcgctcgcccacgccgccctcggcgttgggcaggaacttcggcacgatgaacagcgaaatc                                                                <  4:154170‑M1/148‑86 (MQ=255)                                                                                       gTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAATGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATgg                                                                <  7:152803/148‑1 (MQ=255)                                                                                       gTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATgg                                                                <  3:153078/148‑1 (MQ=255)                                                                                                gTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACgg                                                      >  4:218397/1‑149 (MQ=255)                                                                                                gTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACgg                                                      >  7:97166/1‑149 (MQ=255)                                                                                                      gCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCgatcgagccgcagctcacgccgttgcgctcgcccacgccgctctcggcgttgggcaggaacttcggcacgatgaacagcga                                                                    <  5:90785‑M1/129‑82 (MQ=255)                                                                                                      gCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCgatcgagccgcagctcacgccgttgcgctcgcccacgccgctctcggcgttgggcaggaacttcggcacgatgaacagcga                                                                    >  6:90785‑M1/1‑48 (MQ=255)                                                                                                      gCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGc                                                >  4:238295/1‑149 (MQ=255)                                                                                                                  gACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCAt                                    <  3:218397/149‑1 (MQ=255)                                                                                                                   aCGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATg                                   <  5:126919/149‑1 (MQ=255)                                                                                                                     gCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGaa                                 <  2:211980/149‑1 (MQ=255)                                                                                                                     gCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGa                                  >  8:87137/1‑148 (MQ=255)                                                                                                                         cggccggTACCAAGGGGATTTCGCTGTTCATCGTGCCGATGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAAGGGCGTGAGCTGGGGCTCGCTCGAGCACAGGATGGGCATCCACGGTAACGCTCCCTGCGTCATGacagtc                             >  8:250680/1‑144 (MQ=255)                                                                                                                            ccggTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAt                          <  3:257638/149‑1 (MQ=255)                                                                                                                               gTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAtgct                       <  3:238295/149‑1 (MQ=255)                                                                                                                                  ccAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAtgctgc                     <  4:137321/148‑1 (MQ=255)                                                                                                                                        ggATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGc              <  4:84466/149‑1 (MQ=255)                                                                                                                                         gATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggccaggacgatatggac              <  4:154170‑M2/148‑64 (MQ=255)                                                                                                                                           tttCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTAc           <  2:85771/149‑1 (MQ=255)                                                                                                                                           tttCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTAc           <  1:110533/149‑1 (MQ=255)                                                                                                                                             tCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGAGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggc                             >  6:90785‑M2/1‑81 (MQ=255)                                                                                                                                             tCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGAGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggc                             <  5:90785‑M2/129‑49 (MQ=255)                                                                                                                                              cGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCt         >  2:119102/1‑148 (MQ=255)                                                                                                                                                   ttCgatcgagccgcagctcacgccgttgcgctcgcccacgccgccctcggcgttgggcaggaacttcggcacgatgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggccaggacgatatggacgatgttgtcgg   >  6:177176‑M1/1‑3 (MQ=255)                                                                                                                                                     cATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGc  <  7:87137/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCGAGCCACAGGCCGACGGCAGCTACAAAGTGTCGGGCACCAAGATCTTCATTTCGGCCGGTGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGC  >  NC_002947/445856‑446151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.