New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 446004	41 (0.970)	4 (0.100)	4/248	NT	9.0%	coding (690/1806 nt)	PP_0368	acyl‑CoA dehydrogenase
	?	NC_002947	= 446076	41 (1.010)					coding (762/1806 nt)	PP_0368	acyl‑CoA dehydrogenase

CCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACCGCGCTGCAAGGC  >  NC_002947/445931‑446223                                                                                                                                                  |                                                                                                                                                    ccGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaa                                                                                                                                                  >  6:177176‑M2/1‑146 (MQ=255)        caTCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAacac                                                                                                                                               >  3:150336/1‑145 (MQ=255)            gTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAATGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATgg                                                                                                                                        <  7:152803/148‑1 (MQ=255)            gTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATgg                                                                                                                                        <  3:153078/148‑1 (MQ=255)                     gTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACgg                                                                                                                              >  4:218397/1‑149 (MQ=255)                     gTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACgg                                                                                                                              >  7:97166/1‑149 (MQ=255)                           gCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGc                                                                                                                        >  4:238295/1‑149 (MQ=255)                                       gACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCAt                                                                                                            <  3:218397/149‑1 (MQ=255)                                        aCGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATg                                                                                                           <  5:126919/149‑1 (MQ=255)                                          gCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGaa                                                                                                         <  2:211980/149‑1 (MQ=255)                                          gCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGa                                                                                                          >  8:87137/1‑148 (MQ=255)                                              cggccggTACCAAGGGGATTTCGCTGTTCATCGTGCCGATGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAAGGGCGTGAGCTGGGGCTCGCTCGAGCACAGGATGGGCATCCACGGTAACGCTCCCTGCGTCATGacagtc                                                                                                     >  8:250680/1‑144 (MQ=255)                                                 ccggTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAt                                                                                                  <  3:257638/149‑1 (MQ=255)                                                    gTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAtgct                                                                                               <  3:238295/149‑1 (MQ=255)                                                       ccAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAtgctgc                                                                                             <  4:137321/148‑1 (MQ=255)                                                             ggATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGc                                                                                      <  4:84466/149‑1 (MQ=255)                                                              gATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggccaggacgatatggac                                                                                      <  4:154170‑M2/148‑64 (MQ=255)                                                                tttCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTAc                                                                                   <  2:85771/149‑1 (MQ=255)                                                                tttCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTAc                                                                                   <  1:110533/149‑1 (MQ=255)                                                                  tCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGAGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggc                                                                                                     >  6:90785‑M2/1‑81 (MQ=255)                                                                  tCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGAGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggc                                                                                                     <  5:90785‑M2/129‑49 (MQ=255)                                                                   cGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCt                                                                                 >  2:119102/1‑148 (MQ=255)                                                                          cATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGc                                                                          <  7:87137/148‑1 (MQ=255)                                                                            tCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCGACCTGATCGGcc                                                                         >  1:228287/1‑147 (MQ=255)                                                                                 ccGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCcaa                                                                  >  8:80152/1‑149 (MQ=255)                                                                                         ccTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGcc                                                          >  5:141841/1‑149 (MQ=255)                                                                                             cccAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTg                                                        <  7:80152/147‑1 (MQ=255)                                                                                              ccAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAAc                                                     >  7:21147/1‑149 (MQ=255)                                                                                               cAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCt                                                                                 <  8:29727/120‑1 (MQ=255)                                                                                               cAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCt                                                                                 >  7:29727/1‑120 (MQ=255)                                                                                                aaCGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCgaacagcgaaatccccttggtaccggccggtgcgtccggcaggcgggccaggacgatatggacgatgttgtcggccatgtcgtgctcaccggccgaaa                                                   >  3:154170‑M2/1‑51 (MQ=255)                                                                                                 aCGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGc                                                  <  1:119102/149‑1 (MQ=255)                                                                                                     cGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGt                                              >  4:160499/1‑149 (MQ=255)                                                                                                       aGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTc                                            <  6:141841/149‑1 (MQ=255)                                                                                                         ggcggcGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCa                                           >  4:132932/1‑148 (MQ=255)                                                                                                         ggcggcGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCa                                           <  3:132932/148‑1 (MQ=255)                                                                                                              cgggggCGAGCGCAACGGCGTGAGCTGCGGCGCGATCGAACACAAGATGCGCATCCACTGTAAGGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTCCCTGAGCGGCCACGCCAACAAAGGCCTGACCTGCATGTTGAcgtg                                       >  8:118309/4‑144 (MQ=255)                                                                                                               gTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCAt                                    >  6:66069/1‑149 (MQ=255)                                                                                                                tGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCAt                                    >  4:92858/1‑148 (MQ=255)                                                                                                                    cGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAac                                >  3:182033/1‑148 (MQ=255)                                                                                                                      aGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAt                                                                                                  >  6:182708/1‑80 (MQ=255)                                                                                                                      aGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGAt                                                                                                  <  5:182708/80‑1 (MQ=255)                                                                                                                           aaCGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCg                        >  5:240173/1‑149 (MQ=255)                                                                                                                               gCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTg                    >  6:220795/1‑149 (MQ=255)                                                                                                                                      cTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACcg             >  2:209654/1‑149 (MQ=255)                                                                                                                                        gCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACcgcg           >  7:181845/1‑149 (MQ=255)                                                                                                                                             tcgatcgaACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACCGCGCTGc       >  8:146758/1‑148 (MQ=255)                                                                                                                                                 tcgaACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACCGCGCTGCAAGGc  <  8:21147/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCGACAACATCGTCCATATCGTCCTGGCCCGCCTGCCGGACGCACCGGCCGGTACCAAGGGGATTTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAGGGCGGCGTGGGCGAGCGCAACGGCGTGAGCTGCGGCTCGATCGAACACAAGATGGGCATCCACGGTAACGCTACCTGCGTCATGAACTTCGATGCTGCCACCGGCTACCTGATCGGCCCAGCCAACAAAGGCCTGAACTGCATGTTCACCTTCATGAACACTGCTCGTCTGGGGACCGCGCTGCAAGGC  >  NC_002947/445931‑446223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.