New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	662685 =	48 (1.140)	3 (0.070)	3/246	NT	6.3%	coding (270/1338 nt)	PP_0569	MATE efflux family protein
	?	NC_002947	662722 =	44 (1.090)					coding (233/1338 nt)	PP_0569	MATE efflux family protein

GAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGA  >  NC_002947/662541‑662830                                                                                                                                                 |                                                                                                                                                  ggtaccgctggtggcgctggtcgacagcacggtcatcggtcatctcccgcacgcccaccaactgggcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTg                                                                                                                                               <  7:66813‑M1/5‑1 (MQ=255) gaagaaGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTg                                                                                                                                               >  3:232728/1‑149 (MQ=255) gaagaaGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTg                                                                                                                                               >  3:106107/1‑149 (MQ=255)     aagTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCAcc                                                                                                                                           <  3:170865/149‑1 (MQ=255)           tCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGc                                                                                                                                      >  3:236074/1‑148 (MQ=255)             ggTGGATTGCTGCATGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGACAGCAGGCCGATCTACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCaa                                                                                                                                   <  7:173086/149‑2 (MQ=255)             ggTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCAc                                                                                                                                   >  4:111835/1‑149 (MQ=255)               tGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGTACCAGGACCTGGCGTAGCGCTGCACCGTCGCCAcgg                                                                                                                                 >  7:99288/1‑149 (MQ=255)                          aGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTg                                                                                                                      <  4:236074/149‑1 (MQ=255)                          aGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTg                                                                                                                      <  4:232728/149‑1 (MQ=255)                                  gcTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGTACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCg                                                                                                               >  5:222601/1‑148 (MQ=255)                                   atcggtcatctcccgcacgcccaccaactgggcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGaa                                                                                                             >  7:160578‑M1/111‑149 (MQ=255)                                        ttGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTg                                                                                                                      >  6:169738/1‑135 (MQ=255)                                        ttGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTg                                                                                                                      <  5:169738/135‑1 (MQ=255)                                          gCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCAGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      >  2:53299/1‑149 (MQ=255)                                           cATCGCATGGAGTGCCAGCTGGATGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      <  8:60294/148‑1 (MQ=255)                                                    gAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATgc                                                                                            >  7:231319/1‑149 (MQ=255)                                                    gAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATg                                                                                             <  3:111835/148‑1 (MQ=255)                                                       tGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGTACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCa                                                                                         <  6:222601/149‑1 (MQ=255)                                                        caccaactgggcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTg                                                                                                                                               >  8:58977‑M1/90‑94 (MQ=255)                                                        caccaactgggcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTg                                                                                                                                               <  7:58977‑M1/5‑1 (MQ=255)                                                         ccAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAg                                                                                                                 <  2:39/123‑1 (MQ=255)                                                         ccAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAg                                                                                                                 >  1:39/1‑123 (MQ=255)                                                           aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCTGGACCTGGCGTAGCGCt                                                                                                                                                <  2:153264/90‑1 (MQ=255)                                                           aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCTGGACCTGGCGTAGCGCt                                                                                                                                                >  1:153264/1‑90 (MQ=255)                                                           aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAc                                                                                                   <  4:177109/135‑1 (MQ=255)                                                           aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAc                                                                                                   >  3:177109/1‑135 (MQ=255)                                                            gctggctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAg                                                                                    >  4:106275/1‑149 (MQ=255)                                                              tggctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGcc                                                                                  >  1:232878/1‑149 (MQ=255)                                                                 ctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCAt                                                                               <  3:106275/149‑1 (MQ=255)                                                                  tgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATc                                                                              >  3:153772/1‑149 (MQ=255)                                                                  gcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      >  5:94538‑M1/80‑125 (MQ=255)                                                                  gcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      <  6:94538‑M1/46‑1 (MQ=255)                                                                       ggcagggcCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGcc                                                                         <  7:58154/149‑1 (MQ=255)                                                                              ccAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAccc                                                                                                 <  4:177479/118‑1 (MQ=255)                                                                              ccAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAccc                                                                                                 >  3:177479/1‑118 (MQ=255)                                                                               cagcagGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGa                                                                 <  4:106107/149‑1 (MQ=255)                                                                                   agGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGt                                                             <  7:84883/149‑1 (MQ=255)                                                                                     gCCGACCAACAGGGCGCAGCCGACCGCCAGCAGCAGCCCTCGCACCACGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                           <  4:238056/149‑1 (MQ=255)                                                                                                             cGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGAcc                                                                     <  4:60727/115‑1 (MQ=255)                                                                                                             cGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGAcc                                                                     >  3:60727/1‑115 (MQ=255)                                                                                                               ccAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGTCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                 >  5:37738/1‑149 (MQ=255)                                                                                                               ccAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                 >  1:179513/1‑149 (MQ=255)                                                                                                                 agcagcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGcc                               <  8:231319/149‑1 (MQ=255)                                                                                                                     gcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      <  8:235761/74‑1 (MQ=255)                                                                                                                     gcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                      >  7:235761/1‑74 (MQ=255)                                                                                                                        gcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtgg                        <  1:53299/149‑1 (MQ=255)                                                                                                                        gcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtgg                        >  7:4632/1‑149 (MQ=255)                                                                                                                             tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                           <  3:65377/109‑1 (MQ=255)                                                                                                                             tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                           >  4:65377/1‑109 (MQ=255)                                                                                                                             tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                 >  5:189785/1‑135 (MQ=255)                                                                                                                             tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                 <  6:189785/135‑1 (MQ=255)                                                                                                                               cACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCccacg                                          <  6:33800/124‑1 (MQ=255)                                                                                                                               cACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCccacg                                          >  5:33800/1‑124 (MQ=255)                                                                                                                                aCCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTg                >  5:53459/1‑149 (MQ=255)                                                                                                                                 ccAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGc               >  6:107175/1‑149 (MQ=255)                                                                                                                                        cTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgat        >  5:60267/1‑149 (MQ=255)                                                                                                                                          ggCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatga      >  8:66813/1‑149 (MQ=255)                                                                                                                                             gTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgacc    >  6:201234/1‑148 (MQ=255)                                                                                                                                              tAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgcccga  >  7:176663/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGA  >  NC_002947/662541‑662830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.