New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	662685 =	48 (1.140)	3 (0.070)	3/246	NT	6.3%	coding (270/1338 nt)	PP_0569	MATE efflux family protein
	?	NC_002947	662722 =	44 (1.090)					coding (233/1338 nt)	PP_0569	MATE efflux family protein

CTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAGCGCCACCAGCGGTACCGAAAT  >  NC_002947/662575‑662870                                                                                                                                                    |                                                                                                                                                     atcggtcatctcccgcacgcccaccaactgggcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGaa                                                                                                                                                     >  7:160578‑M1/111‑149 (MQ=255)        gCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCAGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              >  2:53299/1‑149 (MQ=255)         cATCGCATGGAGTGCCAGCTGGATGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              <  8:60294/148‑1 (MQ=255)                  gAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATgc                                                                                                                                    >  7:231319/1‑149 (MQ=255)                  gAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATg                                                                                                                                     <  3:111835/148‑1 (MQ=255)                     tGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGTACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCa                                                                                                                                 <  6:222601/149‑1 (MQ=255)                         aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAc                                                                                                                                           >  3:177109/1‑135 (MQ=255)                         aGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAc                                                                                                                                           <  4:177109/135‑1 (MQ=255)                          gctggctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAg                                                                                                                            >  4:106275/1‑149 (MQ=255)                            tggctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGcc                                                                                                                          >  1:232878/1‑149 (MQ=255)                               ctgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCAt                                                                                                                       <  3:106275/149‑1 (MQ=255)                                tgAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATc                                                                                                                      >  3:153772/1‑149 (MQ=255)                                gcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              >  5:94538‑M1/80‑125 (MQ=255)                                gcgccgtggccgtgggcgccaccttgttcaccttcatggtcggcctgatgggcttcctgcgcatggggtccaccggcttCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              <  6:94538‑M1/46‑1 (MQ=255)                                     ggcagggcCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGcc                                                                                                                 <  7:58154/149‑1 (MQ=255)                                            ccAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAccc                                                                                                                                         >  3:177479/1‑118 (MQ=255)                                            ccAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGAccc                                                                                                                                         <  4:177479/118‑1 (MQ=255)                                             cagcagGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGa                                                                                                         <  4:106107/149‑1 (MQ=255)                                                 agGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGt                                                                                                     <  7:84883/149‑1 (MQ=255)                                                   gCCGACCAACAGGGCGCAGCCGACCGCCAGCAGCAGCCCTCGCACCACGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                                                                   <  4:238056/149‑1 (MQ=255)                                                                           cGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGAcc                                                                                                             >  3:60727/1‑115 (MQ=255)                                                                           cGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGAcc                                                                                                             <  4:60727/115‑1 (MQ=255)                                                                             ccAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGTCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                                                         >  5:37738/1‑149 (MQ=255)                                                                             ccAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                                                         >  1:179513/1‑149 (MQ=255)                                                                               agcagcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGcc                                                                       <  8:231319/149‑1 (MQ=255)                                                                                   gcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              >  7:235761/1‑74 (MQ=255)                                                                                   gcagcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTg                                                                                                                                              <  8:235761/74‑1 (MQ=255)                                                                                      gcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtgg                                                                >  7:4632/1‑149 (MQ=255)                                                                                      gcCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtgg                                                                <  1:53299/149‑1 (MQ=255)                                                                                           tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                                                                   <  3:65377/109‑1 (MQ=255)                                                                                           tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGa                                                                                                   >  4:65377/1‑109 (MQ=255)                                                                                           tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                                                         >  5:189785/1‑135 (MQ=255)                                                                                           tGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcg                                                                         <  6:189785/135‑1 (MQ=255)                                                                                             cACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCccacg                                                                                  <  6:33800/124‑1 (MQ=255)                                                                                             cACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCccacg                                                                                  >  5:33800/1‑124 (MQ=255)                                                                                              aCCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTg                                                        >  5:53459/1‑149 (MQ=255)                                                                                               ccAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGc                                                       >  6:107175/1‑149 (MQ=255)                                                                                                      caccggcttcgctgcccaggccgccggccgtggcgacggtgcagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcgc                                                                        >  5:94538‑M2/47‑125 (MQ=255)                                                                                                      caccggcttcgctgcccaggccgccggccgtggcgacggtgcagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGgcgc                                                                        <  6:94538‑M2/79‑1 (MQ=255)                                                                                                      cTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgat                                                >  5:60267/1‑149 (MQ=255)                                                                                                        ggCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatga                                              >  8:66813/1‑149 (MQ=255)                                                                                                           gTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgacc                                            >  6:201234/1‑148 (MQ=255)                                                                                                            tAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgcccga                                          >  7:176663/1‑149 (MQ=255)                                                                                                             ttcgctgcccaggccgccggccgtggcgacggtgcagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgaccgat                                         >  7:160578‑M2/40‑149 (MQ=255)                                                                                                                GCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgatgaccgatgac                                      >  8:4632‑M1/1‑149 (MQ=255)                                                                                                                            ccACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGAc                          >  8:53160/1‑149 (MQ=255)                                                                                                                             cACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGAcc                         >  1:154186/1‑149 (MQ=255)                                                                                                                               cggccggcGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAg                       <  6:60267/149‑1 (MQ=255)                                                                                                                                ggccggcGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGTCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAgc                      <  6:37738/149‑1 (MQ=255)                                                                                                                                ggccggcGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAgc                      <  2:154186/149‑1 (MQ=255)                                                                                                                                       ggcCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAGCGccacca               <  5:107175/149‑1 (MQ=255)                                                                                                                                         ccTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgat                                                <  3:30763/114‑1 (MQ=255)                                                                                                                                         ccTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAgat                                                >  4:30763/1‑114 (MQ=255)                                                                                                                                               cagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtggtg                                                              <  7:58977‑M2/89‑1 (MQ=255)                                                                                                                                               cagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTtggtg                                                              >  8:58977‑M2/6‑94 (MQ=255)                                                                                                                                               cagcgAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAGCGCCACCAGCGGTAcc       <  7:66813‑M2/144‑1 (MQ=255)                                                                                                                                                    aaGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAGCGCCACCAGCGGTACCGAAAt  >  8:74383/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAGGACCTGGCGTAGCGCTGCACCGTCGCCACGGCCGGCGGCCTGGGCAGCGAAGCCGGTGGACCCCATGCGCAGGAAGCCCATCAGGCCGACCATGAAGGTGAACAAGGTGGCGCCCACGGCCACGGCGCCCAGTTGGTGGGCGTGCGGGAGATGACCGATGACCGTGCTGTCGACCAGCGCCACCAGCGGTACCGAAAT  >  NC_002947/662575‑662870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.