New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	671140 =	45 (1.070)	4 (0.100)	4/242	NT	10.1%	coding (195/1725 nt)	PP_0573	hypothetical protein
	?	NC_002947	671177 =	29 (0.730)					coding (232/1725 nt)	PP_0573	hypothetical protein

CATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACT  >  NC_002947/670993‑671282                                                                                                                                                    |                                                                                                                                               caattcacccaacgtggtttcgcgcccgatcagcggctgatagtgttcgcgcaggtcgcccaaggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagccg                                                                                                                                               >  8:142667‑M1/148‑149 (MQ=255) cATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACg                                                                                                                                               <  8:147450/149‑1 (MQ=255) cATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACg                                                                                                                                               <  8:151433/149‑1 (MQ=255)      cacacaacgtggtttcgcgcccgatcagcggctgatagtgttcgcgcaggtcgcccaaggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagacgggtgttggccggggcccagtcggggttgtcgatatcCGCCCCt                                                                                                                                          <  5:216606‑M1/7‑1 (MQ=255)      aGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCt                                                                                                                                          <  1:142029/149‑1 (MQ=255)       gTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCtg                                                                                                                                         <  7:48573/149‑1 (MQ=255)           ccTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAg                                                                                                                                     >  1:83077/1‑149 (MQ=255)             tATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGGCAACCTGCCGATGACGGACTACGCCCCtgt                                                                                                                                        <  1:22403/144‑1 (MQ=255)             tATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCtgt                                                                                                                                        >  2:22403/1‑144 (MQ=255)             tATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGcc                                                                                                                                   >  2:154874/1‑149 (MQ=255)                 cGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCg                                                                                                                               >  1:119473/1‑149 (MQ=255)                      tctGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGCCCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGCCTACGCCCCTGTGAGACCCCGCATAc                                                                                                                          >  3:25740/1‑149 (MQ=255)                             gTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTgg                                                                                                                    <  2:197744/148‑1 (MQ=255)                                  ccTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGTCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGcccc                                                                                                                                           >  1:264485/1‑120 (MQ=255)                                  ccTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGTCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGcccc                                                                                                                                           <  2:264485/120‑1 (MQ=255)                                  ccTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGccccc                                                                                                                                >  5:108081/1‑131 (MQ=255)                                  ccTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGccccc                                                                                                                                <  6:108081/131‑1 (MQ=255)                                     ctgatagtgttcgctcaggtctcccaagggtaacaccgtgcctccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCGCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                           >  6:216606‑M1/112‑149 (MQ=255)                                      aTGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                           <  2:83077/148‑1 (MQ=255)                                      aTGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                           <  2:67374/148‑1 (MQ=255)                                          agtgttcgcgcaggtcgcccaaggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTAt                                                                                                       >  4:143009‑M1/107‑148 (MQ=255)                                                 ttGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACg                                                                                                                         >  2:20173/1‑123 (MQ=255)                                                 ttGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACg                                                                                                                         <  1:20173/123‑1 (MQ=255)                                                         caagtgcCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCAt                                                                                                                            >  3:235934/5‑112 (MQ=255)                                                         caagtgcCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCAt                                                                                                                            <  4:235934/108‑1 (MQ=255)                                                            ctgcCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGcc                                                                                    >  7:101214/1‑149 (MQ=255)                                                              gcCCACGCCGACCCGTTGCCGGGGTTTCTCGCCAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGGTGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGCcccc                                                                                  >  5:201785/1‑149 (MQ=255)                                                               cccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTAc                                                                                                                                                >  4:46592/1‑86 (MQ=255)                                                               cccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTAc                                                                                                                                                <  3:46592/86‑1 (MQ=255)                                                               cccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGccc                                                                                   <  4:207900/147‑1 (MQ=255)                                                                ggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATc                                                                                                      >  4:144659‑M1/85‑127 (MQ=255)                                                                ggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATc                                                                                                      <  3:144659‑M1/43‑1 (MQ=255)                                                                ccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCgg                                                                                >  6:157671/1‑149 (MQ=255)                                                                  aCGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGcc                                                                              <  2:119473/149‑1 (MQ=255)                                                                                ccGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGt                                                                <  8:101214/149‑1 (MQ=255)                                                                                 cGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGtg                                                               >  8:11019/1‑149 (MQ=255)                                                                                        tctcGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCaa                                                         >  8:36570/1‑148 (MQ=255)                                                                                          tcGACAGCCATGAATACGCGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGCCAACCCCGACTGGGCCCCGGCCACCACCCGGCTGGTGCTGCaaa                                                        >  5:62379/1‑147 (MQ=255)                                                                                          tcGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCaaaaa                                                      <  5:157671/149‑1 (MQ=255)                                                                                            gACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGTaaaaa                                                      <  5:185697/147‑1 (MQ=255)                                                                                            gACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGt                                                    <  1:154874/149‑1 (MQ=255)                                                                                               aGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTgcg                                                 >  4:252/1‑149 (MQ=255)                                                                                               aGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTgcg                                                 <  7:11019/149‑1 (MQ=255)                                                                                                             gcggcgTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACACCCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCa                                   >  5:263917/1‑149 (MQ=255)                                                                                                                gcgTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACgg                                >  1:114314/1‑149 (MQ=255)                                                                                                                         cAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCt                       >  6:245725/1‑149 (MQ=255)                                                                                                                         cAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCt                       >  5:26345/1‑149 (MQ=255)                                                                                                                            cgcCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTgg                    <  7:36570/149‑1 (MQ=255)                                                                                                                              ccAACCGGCCGATGACGGACGACGCCCCTGTGAGCCCCCGCATACGGTGGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCGGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGc                  <  4:25740/149‑1 (MQ=255)                                                                                                                               cAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggcgg                                     >  7:233813/1‑129 (MQ=255)                                                                                                                               cAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggcgg                                     <  8:233813/129‑1 (MQ=255)                                                                                                                                aaCCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGa                >  3:97423/1‑149 (MQ=255)                                                                                                                                      ccGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTgcg          >  5:27089/1‑149 (MQ=255)                                                                                                                                        gATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGcgcg        <  6:27089/149‑1 (MQ=255)                                                                                                                                              ggACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACt  <  4:97423/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               CATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACT  >  NC_002947/670993‑671282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.