New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	671140 =	45 (1.070)	4 (0.100)	4/242	NT	10.1%	coding (195/1725 nt)	PP_0573	hypothetical protein
	?	NC_002947	671177 =	29 (0.730)					coding (232/1725 nt)	PP_0573	hypothetical protein

GATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTGGGTGAATTGCA  >  NC_002947/671029‑671325                                                                                                                                                     |                                                                                                                                                     ctgatagtgttcgctcaggtctcccaagggtaacaccgtgcctccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCGCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                                                                      >  6:216606‑M1/112‑149 (MQ=255)  aTGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                                                                      <  2:67374/148‑1 (MQ=255)  aTGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGggcgg                                                                                                                                                      <  2:83077/148‑1 (MQ=255)      agtgttcgcgcaggtcgcccaaggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTAt                                                                                                                                                  >  4:143009‑M1/107‑148 (MQ=255)                        ctgcCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGcc                                                                                                                               >  7:101214/1‑149 (MQ=255)                          gcCCACGCCGACCCGTTGCCGGGGTTTCTCGCCAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGGTGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGCcccc                                                                                                                             >  5:201785/1‑149 (MQ=255)                           cccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGccc                                                                                                                              <  4:207900/147‑1 (MQ=255)                            ggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATc                                                                                                                                                 <  3:144659‑M1/43‑1 (MQ=255)                            ggggaacaccgtgccgccctcgaagcgcactttttgcagcaccagccgggtgttggccggggcccagtcggggttgtcgatagcCGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATc                                                                                                                                                 >  4:144659‑M1/85‑127 (MQ=255)                            ccACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCgg                                                                                                                           >  6:157671/1‑149 (MQ=255)                              aCGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGcc                                                                                                                         <  2:119473/149‑1 (MQ=255)                                            ccGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGt                                                                                                           <  8:101214/149‑1 (MQ=255)                                             cGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGtg                                                                                                          >  8:11019/1‑149 (MQ=255)                                                    tctcGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCaa                                                                                                    >  8:36570/1‑148 (MQ=255)                                                      tcGACAGCCATGAATACGCGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGCCAACCCCGACTGGGCCCCGGCCACCACCCGGCTGGTGCTGCaaa                                                                                                   >  5:62379/1‑147 (MQ=255)                                                      tcGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCaaaaa                                                                                                 <  5:157671/149‑1 (MQ=255)                                                        gACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGTaaaaa                                                                                                 <  5:185697/147‑1 (MQ=255)                                                        gACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGt                                                                                               <  1:154874/149‑1 (MQ=255)                                                           aGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTgcg                                                                                            >  4:252/1‑149 (MQ=255)                                                           aGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTgcg                                                                                            <  7:11019/149‑1 (MQ=255)                                                                         gcggcgTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACACCCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCa                                                                              >  5:263917/1‑149 (MQ=255)                                                                            gcgTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACgg                                                                           >  1:114314/1‑149 (MQ=255)                                                                                     cAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCt                                                                  >  5:26345/1‑149 (MQ=255)                                                                                     cAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCt                                                                  >  6:245725/1‑149 (MQ=255)                                                                                        cgcCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTgg                                                               <  7:36570/149‑1 (MQ=255)                                                                                          ccAACCGGCCGATGACGGACGACGCCCCTGTGAGCCCCCGCATACGGTGGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCGGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGc                                                             <  4:25740/149‑1 (MQ=255)                                                                                           cAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggcgg                                                                                <  8:233813/129‑1 (MQ=255)                                                                                           cAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggcgg                                                                                >  7:233813/1‑129 (MQ=255)                                                                                            aaCCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGa                                                           >  3:97423/1‑149 (MQ=255)                                                                                                  ccGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTgcg                                                     >  5:27089/1‑149 (MQ=255)                                                                                                    gATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGcgcg                                                   <  6:27089/149‑1 (MQ=255)                                                                                                          ggACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACt                                             <  4:97423/149‑1 (MQ=255)                                                                                                          gatagccgcccctgccaaccgtatgcgggggctcacaggggcgGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTcccc                                                                   <  3:144659‑M2/84‑1 (MQ=255)                                                                                                          gatagccgcccctgccaaccgtatgcgggggctcacaggggcgGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTcccc                                                                   >  4:144659‑M2/44‑127 (MQ=255)                                                                                                           atagccgcccctgccaaccgtatgcgggggctcacaggggcgGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACt                                             >  4:143009‑M2/43‑148 (MQ=255)                                                                                                               ccgcccctgccaaccgtatgcgggggctcacaggcgcgGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGAGGCACGGTGTTACCCTTGGGAGACCTGAGCGAACACTATCAg                                        >  6:216606‑M2/39‑149 (MQ=255)                                                                                                                 GCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCa                                         <  5:144139‑M1/146‑1 (MQ=255)                                                                                                                 GCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCa                                         >  6:144139‑M1/1‑146 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggc                                                                                  >  8:180040‑M1/1‑103 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGggc                                                                                  <  7:180040‑M1/103‑1 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACg                                                                            >  7:38670‑M1/1‑109 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACg                                                                            <  8:38670‑M1/109‑1 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTgc                                                      >  4:170675‑M1/1‑131 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTgc                                                      <  3:170675‑M1/131‑1 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGc                                    >  6:263917‑M1/1‑149 (MQ=255)                                                                                                                   CCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGc                                    <  7:51942‑M1/149‑1 (MQ=255)                                                                                                                                   aTACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGgc                           >  2:116237/1‑142 (MQ=255)                                                                                                                                   aTACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGgc                           <  1:116237/142‑1 (MQ=255)                                                                                                                                      cGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCAc                 <  6:26345/149‑1 (MQ=255)                                                                                                                                            gCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTggg           >  6:60514/1‑149 (MQ=255)                                                                                                                                            gCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTgg            <  2:114314/148‑1 (MQ=255)                                                                                                                                              aggggcgGATATCGACAACCCCGACTGGGCCCCGGCCAACACCCGTCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTtgtgtg         <  5:216606‑M2/142‑1 (MQ=255)                                                                                                                                                   cgGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTGGGTGAATTg    >  8:142667‑M2/3‑149 (MQ=255)                                                                                                                                                     gcTATCGACACCCCCGACTGGGCCCCGGCCAACACCCGGCGGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTGGGTGAATTgca  <  6:62379/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGCGCCAACCTGCCGATGACGGACTACGCCCCTGTGAGCCCCCGCATACGGTTGGCAGGGGCGGCTATCGACAACCCCGACTGGGCCCCGGCCAACACCCGGCTGGTGCTGCAAAAAGTGCGCTTCGAGGGCGGCACGGTGTTCCCCTTGGGCGACCTGCGCGAACACTATCAGCCGCTGATCGGGCGCGAAACCACGTTGGGTGAATTGCA  >  NC_002947/671029‑671325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.