New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	960092 =	41 (0.970)	3 (0.070)	3/246	NT	6.8%	coding (361/411 nt)	PP_0821	hypothetical protein
	?	NC_002947	960124 =	43 (1.070)					coding (393/411 nt)	PP_0821	hypothetical protein

GGCAAGCTGGATGCCGGGCAGCAGAAGAGCCTGCGGGATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGG  >  NC_002947/959945‑960239                                                                                                                                                    |                                                                                                                                                       ggCAAGCTGGATGCCGGGCAGCAGAAGAGCCTGCGGGATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGAc                                                                                                                                                       >  1:68969/1‑149 (MQ=255)               cGGGCAGCAGAAGAGCCTGCGGGATGTTCACCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTg                                                                                                                                        >  1:24519/1‑149 (MQ=255)                             gCCTGCGGGATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCgg                                                                                                                        <  5:30503/149‑1 (MQ=255)                                     gATGTTCAGCGCAAGTGCCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGAGGGACCCTGGCGCAGCTGGAAGGTGGCAGATGCGTAATGGACATGACCCG‑CGACCGCGCAGCT‑GA‑ACTGGAGCGGCTGCTTAg                                                                                                                >  8:35217/1‑149 (MQ=255)                                            ccacgcggagcatgacaccggcaaagccggtgttcgcggctgaacccgcgcctgcaaatgtgggccaatcatgcctgaacaggcgctactgcccagggctaagcACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTggg                                                                                                         >  2:164443‑M1/105‑149 (MQ=255)                                            aGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                          <  6:229705/148‑1 (MQ=255)                                                           ccTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                          <  1:240241/133‑1 (MQ=255)                                                           ccTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                          >  2:240241/1‑133 (MQ=255)                                                                cGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCa                                                                                     >  3:108467/1‑149 (MQ=255)                                                                  tGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCgg                                                                                                                        <  4:66785/112‑1 (MQ=255)                                                                  tGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCgg                                                                                                                        >  3:66785/1‑112 (MQ=255)                                                                     tGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGAtt                                                                                >  3:50605/1‑149 (MQ=255)                                                                         aaTTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACcgcg                                                                                                                                           >  2:253008/1‑88 (MQ=255)                                                                         aaTTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACcgcg                                                                                                                                           <  1:253008/88‑1 (MQ=255)                                                                         aaTTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTGAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                            >  6:55732/1‑149 (MQ=255)                                                                            tGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGATGTGGGCGGTGCGATAGAATGGAGCGGGTGCTTACCCATGGGCAGTGGCGCCTGTACAGGCATGATTGGcc                                                                            >  1:86692/1‑149 (MQ=255)                                                                               gcggctgaacccgcgcctgcaaatgtgggccaatcatgcctgaacaggcgctactgcccagggctaagcACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCgg                                                                                                                        <  4:29075‑M1/30‑1 (MQ=255)                                                                               gcggctgaacccgcgcctgcaaatgtgggccaatcatgcctgaacaggcgctactgcccagggctaagcACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCgg                                                                                                                        >  3:29075‑M1/70‑99 (MQ=255)                                                                               cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAtt                                                                      >  1:98627/1‑149 (MQ=255)                                                                               cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAtt                                                                      >  1:14710/1‑149 (MQ=255)                                                                                     cATGTACCGGCCAGTGGCGGGAACCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAgg                                                                <  8:177456/149‑1 (MQ=255)                                                                                       tGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGa                                                                                  <  1:189331/129‑1 (MQ=255)                                                                                       tGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGa                                                                                  >  2:189331/1‑129 (MQ=255)                                                                                          aCAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCgg                                                           >  3:218466/1‑149 (MQ=255)                                                                                           cAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGTCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCTGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGTCATGATTGGCCCACATTTGCAGGCGCgg                                                           <  7:35217/148‑1 (MQ=255)                                                                                               ccAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGtt                                                        >  4:262487/1‑147 (MQ=255)                                                                                                 aGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGc                                                    >  2:159717/1‑149 (MQ=255)                                                                                                   tGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcg                                                  <  4:108467/149‑1 (MQ=255)                                                                                                     gCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcgcg                                                <  2:134344/149‑1 (MQ=255)                                                                                                       gggACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGaa                                              >  3:144793/1‑149 (MQ=255)                                                                                                       gggACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGaa                                              <  4:144793/149‑1 (MQ=255)                                                                                                              tGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                            >  5:232986/1‑112 (MQ=255)                                                                                                              tGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                            <  6:232986/112‑1 (MQ=255)                                                                                                                 cgcAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCttt                                    <  3:262487/149‑1 (MQ=255)                                                                                                                         gAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCg                                >  5:55200/1‑145 (MQ=255)                                                                                                                         gAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCg                                <  6:55200/145‑1 (MQ=255)                                                                                                                                gCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTc                     <  2:24519/149‑1 (MQ=255)                                                                                                                                    cTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCcgcg                 >  7:127984/1‑149 (MQ=255)                                                                                                                                      gCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTg                                                                                                           >  5:226931/1‑57 (MQ=255)                                                                                                                                      gCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTg                                                                                                           <  6:226931/57‑1 (MQ=255)                                                                                                                                        atcatGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc             <  2:68969/149‑1 (MQ=255)                                                                                                                                         tcatGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGcc            >  1:32119/1‑149 (MQ=255)                                                                                                                                           atGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCctt          >  3:133673/1‑149 (MQ=255)                                                                                                                                            tGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc             <  1:47787/145‑1 (MQ=255)                                                                                                                                            tGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc             >  2:47787/1‑145 (MQ=255)                                                                                                                                                 aTGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgc    >  1:189164/1‑149 (MQ=255)                                                                                                                                                  tGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgcg   <  8:127984/149‑1 (MQ=255)                                                                                                                                                  tGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgcg   <  4:50605/149‑1 (MQ=255)                                                                                                                                                   gACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg  >  4:38810/1‑149 (MQ=255)                                                                                                                                                    ACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg  >  5:55732‑M1/1‑148 (MQ=255)                                                                                                                                                    ACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg  >  2:98627‑M1/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                       GGCAAGCTGGATGCCGGGCAGCAGAAGAGCCTGCGGGATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGG  >  NC_002947/959945‑960239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.