New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	960092 =	41 (0.970)	3 (0.070)	3/246	NT	6.8%	coding (361/411 nt)	PP_0821	hypothetical protein
	?	NC_002947	960124 =	43 (1.070)					coding (393/411 nt)	PP_0821	hypothetical protein

GATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCTCCTACAGGGTAC  >  NC_002947/959981‑960262                                                                                                                                                   |                                                                                                                                           gATGTTCAGCGCAAGTGCCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGAGGGACCCTGGCGCAGCTGGAAGGTGGCAGATGCGTAATGGACATGACCCG‑CGACCGCGCAGCT‑GA‑ACTGGAGCGGCTGCTTAg                                                                                                                                       >  8:35217/1‑149 (MQ=255)        ccacgcggagcatgacaccggcaaagccggtgttcgcggctgaacccgcgcctgcaaatgtgggccaatcatgcctgaacaggcgctactgcccagggctaagcACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTggg                                                                                                                                >  2:164443‑M1/105‑149 (MQ=255)        aGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                                                 <  6:229705/148‑1 (MQ=255)                       ccTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                                                 >  2:240241/1‑133 (MQ=255)                       ccTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTgg                                                                                                                                 <  1:240241/133‑1 (MQ=255)                            cGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCa                                                                                                            >  3:108467/1‑149 (MQ=255)                                 tGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGAtt                                                                                                       >  3:50605/1‑149 (MQ=255)                                     aaTTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTGAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                                                   >  6:55732/1‑149 (MQ=255)                                        tGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGATGTGGGCGGTGCGATAGAATGGAGCGGGTGCTTACCCATGGGCAGTGGCGCCTGTACAGGCATGATTGGcc                                                                                                   >  1:86692/1‑149 (MQ=255)                                           cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAtt                                                                                             >  1:98627/1‑149 (MQ=255)                                           cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAtt                                                                                             >  1:14710/1‑149 (MQ=255)                                                 cATGTACCGGCCAGTGGCGGGAACCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAgg                                                                                       <  8:177456/149‑1 (MQ=255)                                                   tGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGa                                                                                                         >  2:189331/1‑129 (MQ=255)                                                   tGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGa                                                                                                         <  1:189331/129‑1 (MQ=255)                                                      aCAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCgg                                                                                  >  3:218466/1‑149 (MQ=255)                                                       cAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGTCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCTGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGTCATGATTGGCCCACATTTGCAGGCGCgg                                                                                  <  7:35217/148‑1 (MQ=255)                                                           ccAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGtt                                                                               >  4:262487/1‑147 (MQ=255)                                                             aGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGc                                                                           >  2:159717/1‑149 (MQ=255)                                                               tGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcg                                                                         <  4:108467/149‑1 (MQ=255)                                                                 gCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcgcg                                                                       <  2:134344/149‑1 (MQ=255)                                                                   gggACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGaa                                                                     >  3:144793/1‑149 (MQ=255)                                                                   gggACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGaa                                                                     <  4:144793/149‑1 (MQ=255)                                                                          tGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                                                   >  5:232986/1‑112 (MQ=255)                                                                          tGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGcc                                                                                                   <  6:232986/112‑1 (MQ=255)                                                                             cgcAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCttt                                                           <  3:262487/149‑1 (MQ=255)                                                                                     gAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCg                                                       <  6:55200/145‑1 (MQ=255)                                                                                     gAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCg                                                       >  5:55200/1‑145 (MQ=255)                                                                                            gCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTc                                            <  2:24519/149‑1 (MQ=255)                                                                                                cTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCcgcg                                        >  7:127984/1‑149 (MQ=255)                                                                                                  gCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTg                                                                                                                                  >  5:226931/1‑57 (MQ=255)                                                                                                  gCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTg                                                                                                                                  <  6:226931/57‑1 (MQ=255)                                                                                                    atcatGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc                                    <  2:68969/149‑1 (MQ=255)                                                                                                     tcatGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGcc                                   >  1:32119/1‑149 (MQ=255)                                                                                                      cccagggctaagcacccgctccagttccgcagcgcggtcgcgggtGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTgg                                     >  2:164443‑M2/46‑149 (MQ=255)                                                                                                       atGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCctt                                 >  3:133673/1‑149 (MQ=255)                                                                                                        tGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc                                    >  2:47787/1‑145 (MQ=255)                                                                                                        tGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGc                                    <  1:47787/145‑1 (MQ=255)                                                                                                             aTGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgc                           >  1:189164/1‑149 (MQ=255)                                                                                                              tGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgcg                          <  4:50605/149‑1 (MQ=255)                                                                                                              tGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgcg                          <  8:127984/149‑1 (MQ=255)                                                                                                               gACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg                         >  4:38810/1‑149 (MQ=255)                                                                                                                ACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg                         >  5:55732‑M1/1‑148 (MQ=255)                                                                                                                ACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg                         >  2:98627‑M1/1‑148 (MQ=255)                                                                                                                  CCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGt                       <  5:240293‑M1/148‑1 (MQ=255)                                                                                                                  CCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGt                       <  2:259213‑M1/148‑1 (MQ=255)                                                                                                                     ccgctccagttccgcagcgcggtcgcgggtGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcgc                                                                        <  4:29075‑M2/69‑1 (MQ=255)                                                                                                                     ccgctccagttccgcagcgcggtcgcgggtGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCcgc                                                                        >  3:29075‑M2/31‑99 (MQ=255)                                                                                                                          cgcgCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGc               <  2:189164/149‑1 (MQ=255)                                                                                                                            cgcTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGATCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCt              >  5:7955/1‑148 (MQ=255)                                                                                                                                 cG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCTCCTa          >  2:207868/1‑147 (MQ=255)                                                                                                                                 cG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCTCCTa          <  1:259213/147‑1 (MQ=255)                                                                                                                                           gAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCTCCTACAGGGTAc  <  6:144977/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           GATGTTCAGCGCAAGTGGCTGGCCTACCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCG‑CGACCGCGCTGCG‑GA‑ACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCTCCTACAGGGTAC  >  NC_002947/959981‑960262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.