New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 982600	34 (0.810)	4 (0.100)	4/246	NT	11.2%	coding (1477/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 982652	31 (0.770)					coding (1529/1863 nt)	hscA	DnaK‑like molecular chaperone

GAGCTGATCAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGA  >  NC_002947/982453‑982748                                                                                                                                                      |                                                                                                                                                     gagcTGATCAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGt                                                                                                                                                     <  7:138459/149‑1 (MQ=255)      gATCAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAg                                                                                                                                                >  8:38826/1‑149 (MQ=255)       aTCAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGc                                                                                                                                               <  2:244984/149‑1 (MQ=255)         cAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATGTGTTCCCGGTGGTGCAAAAATCCGCGTCACATTCCAGGTGGATGCCGATGGCATGAACAGCGACGCTGCCCGCGAGCTGGGTTCGGGCGTGGaacc                                                                                                                                               >  1:205744/1‑146 (MQ=255)         cAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATGCGTTGCCGGTGCTGCAAAAAACCGCGTCACGTTCCAGGTGGATGCCGATGGCATGATCAGCTACGATCCCCGCTAGATGGGTACGGGCGTGGAAGc                                                                                                                                               >  1:202368/1‑148 (MQ=255)           gTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAg                                                                                                                                            >  1:174890/1‑148 (MQ=255)              aCTGCCGTTCGCTGGCCCGCTTCGAGGCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGatttcgccgtcgg                                                                                                                                         >  1:3334‑M1/1‑136 (MQ=255)              aCTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCAtt                                                                                                                                        >  3:72941/1‑149 (MQ=255)                  ccGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAgg                                                                                                                                    >  4:82334/1‑149 (MQ=255)                  ccGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAgg                                                                                                                                    >  6:77706/1‑149 (MQ=255)                   cGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGt                                                                                                                                   <  5:77706/149‑1 (MQ=255)                    gTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTc                                                                                                                                  <  5:248982/149‑1 (MQ=255)                         cTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGcc                                                                                                                             >  4:155376/1‑149 (MQ=255)                            gCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGt                                                                                                                           <  2:202368/148‑1 (MQ=255)                            gCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGt                                                                                                                           <  2:205744/148‑1 (MQ=255)                                        gCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGa                                                                                                               <  2:194348/149‑1 (MQ=255)                                           gcgcGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGAcc                                                                                                             >  5:258143/1‑148 (MQ=255)                                             gcgGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGCTGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGAc                                                                                                          >  7:66188/1‑149 (MQ=255)                                                    cccGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTg                                                                                                                <  1:44572/136‑1 (MQ=255)                                                    cccGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTg                                                                                                                >  2:44572/1‑136 (MQ=255)                                                    cccGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGaaa                                                                                                   >  8:64347/1‑149 (MQ=255)                                                     ccGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttcca                                                                                                  >  6:248971‑M1/1‑97 (MQ=255)                                                     ccGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAAt                                                                                                  <  1:12197/149‑1 (MQ=255)                                                      cGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATc                                                                                                 >  2:122354‑M2/1‑148 (MQ=255)                                                        gCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgc                                                                                               >  4:72941‑M2/1‑146 (MQ=255)                                                         ccATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcc                                                                                              <  2:3334‑M1/149‑57 (MQ=255)                                                          cATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgccc                                                                                             >  6:258143‑M2/1‑144 (MQ=255)                                                                ttGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacc                                                                                        <  5:248971‑M1/149‑63 (MQ=255)                                                                               aaaTCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTc                                                                         <  2:174890/149‑1 (MQ=255)                                                                                          aCCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCgg                                                              >  1:162126/1‑149 (MQ=255)                                                                                             ttCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTc                                                           >  3:66957/1‑149 (MQ=255)                                                                                                  ggTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcg                                                                                                >  8:57415‑M2/1‑105 (MQ=255)                                                                                                  ggTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcg                                                                                                <  7:57415‑M2/107‑3 (MQ=255)                                                                                                      gATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCa                                                  >  3:217249/1‑149 (MQ=255)                                                                                                           cGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCCGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGccc                                             >  4:212607/1‑149 (MQ=255)                                                                                                                  cTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGa                                                        <  8:204383/131‑1 (MQ=255)                                                                                                                  cTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGa                                                        >  7:204383/1‑131 (MQ=255)                                                                                                                     cTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGc                                    >  1:98425/1‑148 (MQ=255)                                                                                                                          cGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGc                              <  8:66188/149‑1 (MQ=255)                                                                                                                            tCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCAt                            <  6:9747/149‑1 (MQ=255)                                                                                                                               cTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAg                         <  2:162126/149‑1 (MQ=255)                                                                                                                                  cccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAgg                        <  3:155376/147‑1 (MQ=255)                                                                                                                                  cccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAgg                        >  8:15759/1‑147 (MQ=255)                                                                                                                                   ccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGc                                                   <  6:43032/119‑1 (MQ=255)                                                                                                                                   ccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGc                                                   >  5:43032/1‑119 (MQ=255)                                                                                                                                             ggTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaa           <  5:248971‑M2/149‑88 (MQ=255)                                                                                                                                                  gggCGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatg      >  6:258143‑M1/1‑5 (MQ=255)                                                                                                                                                   ggCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatgg     <  2:3334‑M2/149‑94 (MQ=255)                                                                                                                                                    gCGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatggc    >  4:72941‑M1/1‑3 (MQ=255)                                                                                                                                                     cGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacc                                             <  7:57415‑M1/107‑106 (MQ=255)                                                                                                                                                     cGatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacc                                             >  8:57415‑M1/1‑2 (MQ=255)                                                                                                                                                      gatttcgccgtcggtcaggccgtaggacggcttgacctgaatgctggcttccacgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatggccg  >  2:122354‑M1/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GAGCTGATCAGTGACTGCCGTTCGCTGGCCCGCTTCGA‑GCTGCGCGGCATCCCGGCCATG‑GTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGA  >  NC_002947/982453‑982748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.