New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 982600	34 (0.810)	4 (0.100)	4/246	NT	11.2%	coding (1477/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 982652	31 (0.770)					coding (1529/1863 nt)	hscA	DnaK‑like molecular chaperone

CCGGCCATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCGCCTGCTCAGC  >  NC_002947/982504‑982794                                                                                                                                                     |                                                                                                                                               ccGGCCATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAAt                                                                                                                                                <  1:12197/149‑1 (MQ=255)  cGGCCATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATc                                                                                                                                               >  2:122354‑M2/1‑148 (MQ=255)    gCCATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgc                                                                                                                                             >  4:72941‑M2/1‑146 (MQ=255)      cATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgccc                                                                                                                                           >  6:258143‑M2/1‑144 (MQ=255)                          aaaTCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTc                                                                                                                       <  2:174890/149‑1 (MQ=255)                                     aCCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCgg                                                                                                            >  1:162126/1‑149 (MQ=255)                                        ttCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTc                                                                                                         >  3:66957/1‑149 (MQ=255)                                             ggTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcg                                                                                                                                              <  7:57415‑M2/107‑3 (MQ=255)                                             ggTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcg                                                                                                                                              >  8:57415‑M2/1‑105 (MQ=255)                                                 gATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCa                                                                                                >  3:217249/1‑149 (MQ=255)                                                      cGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCCGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGccc                                                                                           >  4:212607/1‑149 (MQ=255)                                                             cTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGa                                                                                                      <  8:204383/131‑1 (MQ=255)                                                             cTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGa                                                                                                      >  7:204383/1‑131 (MQ=255)                                                                cTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGc                                                                                  >  1:98425/1‑148 (MQ=255)                                                                     cGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGc                                                                            <  8:66188/149‑1 (MQ=255)                                                                       tCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCAt                                                                          <  6:9747/149‑1 (MQ=255)                                                                          cTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAg                                                                       <  2:162126/149‑1 (MQ=255)                                                                             cccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAgg                                                                      <  3:155376/147‑1 (MQ=255)                                                                             cccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAgg                                                                      >  8:15759/1‑147 (MQ=255)                                                                              ccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGc                                                                                                 >  5:43032/1‑119 (MQ=255)                                                                              ccGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGc                                                                                                 <  6:43032/119‑1 (MQ=255)                                                                                        ggTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaa                                                         <  5:248971‑M2/149‑88 (MQ=255)                                                                                              ggCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatgg                                                   <  2:3334‑M2/149‑94 (MQ=255)                                                                                                  tGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatggccgg                                               >  6:248971‑M2/1‑52 (MQ=255)                                                                                                  tGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAg                                               <  3:212607/149‑1 (MQ=255)                                                                                                    gAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGCCGGCGACATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGc                                             >  2:34016/1‑149 (MQ=255)                                                                                                    gAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGc                                             >  6:117558/1‑149 (MQ=255)                                                                                                         cAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGgct                                                      <  6:199772/135‑1 (MQ=255)                                                                                                         cAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGgct                                                      >  5:199772/1‑135 (MQ=255)                                                                                                         cAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTAc                                        <  3:82334/149‑1 (MQ=255)                                                                                                         cAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCACCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTa                                         >  1:59007/1‑148 (MQ=255)                                                                                                           gCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTc                                                                                                                       <  3:243423/68‑1 (MQ=255)                                                                                                           gCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTc                                                                                                                       >  4:243423/1‑68 (MQ=255)                                                                                                                  ggTCAGGCCGTAGGACGGCTTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGc                                                          <  2:189618/122‑1 (MQ=255)                                                                                                                  ggTCAGGCCGTAGGACGGCTTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGc                                                          >  1:189618/1‑122 (MQ=255)                                                                                                                            tCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGa                     <  7:64347/149‑1 (MQ=255)                                                                                                                                     cTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGCACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCg            >  6:200105/1‑149 (MQ=255)                                                                                                                                         ccGACGGCGAAATcgcccgaacccagctcgcgggcagcgacgctgagcaggccatcggcatccacctggaaggtgacgcggatttttgcagcaccggcaaccatggccgggatgccgcgcagcctcgaagcgggccagcgaacggcagt        >  1:3334‑M2/1‑13 (MQ=255)                                                                                                                                          cGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCGCCTGc       >  1:134673/1‑149 (MQ=255)                                                                                                                                          cGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCAAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCGCCTGc       >  6:168060/1‑149 (MQ=255)                                                                                                                                               gCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGCGCGGCTGCGCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCGCCTGCTcagc  <  4:217249/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CCGGCCATGGTTGCCGGTGCTGCAAAAATCCGCGTCACCTTCCAGGTGGATGCCGATGGCCTGCTCAGCGTCGCTGCCCGCGAGCTGGGTTCGGGCGTGGAAGCCAGCATTCAGGTCAAGCCGTCCTACGGCCTGACCGACGGCGAAATCGCCCGCATGCTCAAGGACTCCTTCGAACACGCCGGTTCCGACAAGCATGCCCGCCAGCTGCGAGAGCATCAGGTAGATGGCGAGCGGCTGCTCGAGGCGGTACAGGGCGCCCTGGACGCCGACGGCGATCGCCTGCTCAGC  >  NC_002947/982504‑982794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.