New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1090134	38 (0.900)	6 (0.150)	4/242	NT	15.1%	coding (995/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	= 1090156	32 (0.810)					coding (1017/1380 nt)	fumC‑I	class 2 fumarate hydratase

GATGAAAATCGCCAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAA  >  NC_002947/1089988‑1090282                                                                                                                                                   |                                                                                                                                                     gatgaAAATCGCCAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTcgcc                                                                                                                                                     <  4:21855/148‑1 (MQ=255)      aaaTCGCCAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCaa                                                                                                                                               <  7:161647/149‑1 (MQ=255)         tCGCCAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTg                                                                                                                                            <  5:92456/149‑1 (MQ=255)            ccAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaat                                                                                                                                          >  1:102479‑M1/1‑136 (MQ=255)             cAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTg                                                                                                                                        >  5:186677/1‑149 (MQ=255)              aaCGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTgg                                                                                                                                       >  5:165732/1‑149 (MQ=255)                       cgcTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCATGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAacga                                                                                                                                 <  4:114119/146‑1 (MQ=255)                       cgcTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgc                                                                                                                              >  1:105803‑M2/1‑147 (MQ=255)                           ggATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgcgac                                                                                                                           <  5:222812‑M2/148‑6 (MQ=255)                            gATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgcgacca                                                                                                                         <  3:27636‑M2/149‑8 (MQ=255)                              tGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATc                                                                                                                       <  1:158006/149‑1 (MQ=255)                                aaCTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaatcacttgggcggcgaccatgg                                                                                                                      <  2:102479‑M1/148‑33 (MQ=255)                                  cTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAg                                                                                                                                              <  6:203264/122‑1 (MQ=255)                                  cTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAg                                                                                                                                              >  5:203264/1‑122 (MQ=255)                                   tCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGt                                                                                                                  >  1:256691/1‑149 (MQ=255)                                     cGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaatcacttgggcggcgaccatgg                                                                                                                      >  6:95010‑M1/1‑111 (MQ=255)                                     cGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaatcacttgggcggcgaccatgg                                                                                                                      <  5:95010‑M1/143‑33 (MQ=255)                                        cccGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTg                                                                                                                                        >  1:110850/1‑122 (MQ=255)                                        cccGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTg                                                                                                                                        <  2:110850/122‑1 (MQ=255)                                               gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAg                                                                                                             <  7:11781/142‑1 (MQ=255)                                               gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAg                                                                                                             >  8:11781/1‑142 (MQ=255)                                               gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAACCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGc                                                                                                      >  6:128181/1‑149 (MQ=255)                                                 cGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaatcacttgggcggcgaccatgg                                                                                                                      <  6:63246‑M1/131‑33 (MQ=255)                                                 cGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCgtcgttgccaatcacttgggcggcgaccatcg                                                                                                                      >  5:63246‑M1/1‑99 (MQ=255)                                                   gTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGt                                                                                                  <  2:256691/149‑1 (MQ=255)                                                                cGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTc                                                                                            <  6:206005/142‑1 (MQ=255)                                                                cGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTc                                                                                            >  5:206005/1‑142 (MQ=255)                                                                  aGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGACAGGCAAGGTCAACCCGGTGATACCGGAGGCCACTGCCATGGTCGCCGCCCAAGAGATTGGCAACGACGCGACCATCGCCGTCGCAGGTAAACCCCGTAACTTCGAGCTCAAc                                                                                   >  6:164901/1‑149 (MQ=255)                                                                       cAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAt                                                                              >  3:204771/1‑149 (MQ=255)                                                                        aaGCTCTGCAGCCGGGCTCTTCGATCATTCCAGGCAAGGTCAACCCGGGGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtg                                                                             <  6:165732/149‑1 (MQ=255)                                                                        aaGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtg                                                                             <  4:27636/149‑1 (MQ=255)                                                                          gCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtgct                                                                           <  4:204771/149‑1 (MQ=255)                                                                            tctGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCg                                                                                                                      >  7:154373/1‑104 (MQ=255)                                                                            tctGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCg                                                                                                                      <  8:154373/104‑1 (MQ=255)                                                                              tGCAGCCGGGCTCTTCGATCATGCCAGGCTAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCTGTAACTTCGAGCTGAACGTGAtgctgc                                                                         <  5:164901/147‑1 (MQ=255)                                                                                      ggCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGc                                                               <  6:186677/149‑1 (MQ=255)                                                                                       gCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGcc                                                              >  7:243672/1‑149 (MQ=255)                                                                                       gCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGcc                                                              <  6:154631/149‑1 (MQ=255)                                                                                           ttCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGc                                                           >  3:12702/1‑148 (MQ=255)                                                                                             cGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCaa                                                         <  5:128181/148‑1 (MQ=255)                                                                                                  aTGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACctgc                                                    <  8:85687/148‑1 (MQ=255)                                                                                                         gCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAg                                             >  1:116429/1‑148 (MQ=255)                                                                                                                    ccGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGAt                                 <  2:116429/149‑1 (MQ=255)                                                                                                                                      aCTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCtt               >  5:183770/1‑149 (MQ=255)                                                                                                                                          cgatgGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccg                             >  5:63246‑M2/3‑32 (MQ=255)                                                                                                                                          ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagtt            <  2:102479‑M2/148‑117 (MQ=255)                                                                                                                                          ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccg                 <  5:95010‑M2/143‑112 (MQ=255)                                                                                                                                          ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccg                 >  6:95010‑M2/1‑32 (MQ=255)                                                                                                                                          ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccg                             <  6:63246‑M2/131‑100 (MQ=255)                                                                                                                                          ccATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTg           >  3:217088/1‑149 (MQ=255)                                                                                                                                           cATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTgg          <  6:222812/149‑1 (MQ=255)                                                                                                                                            aTGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGc         >  5:94097/1‑149 (MQ=255)                                                                                                                                             tGGTCGCgtcgttgccaatcacttgggcggcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagttcatc        <  3:27636‑M1/149‑143 (MQ=255)                                                                                                                                             tGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGcc        <  6:183770/149‑1 (MQ=255)                                                                                                                                               gTCGCgtcgttgccaatcacttgggcggcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagttcatcc       <  5:222812‑M1/148‑144 (MQ=255)                                                                                                                                                 cgccgcCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACa    <  8:243672/149‑1 (MQ=255)                                                                                                                                                  gcgtcgttgccaatcacttgggcggcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagttcatccagcg   >  1:105803‑M1/1‑2 (MQ=255)                                                                                                                                                   ccgccCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACaaa  <  4:12702/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GATGAAAATCGCCAACGATCTGCGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAA  >  NC_002947/1089988‑1090282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.