New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1090134	38 (0.900)	6 (0.150)	4/242	NT	15.1%	coding (995/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	= 1090156	32 (0.810)					coding (1017/1380 nt)	fumC‑I	class 2 fumarate hydratase

CGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTC  >  NC_002947/1090010‑1090303                                                                                                                                                   |                                                                                                                                                    cgcTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgc                                                                                                                                                   >  1:105803‑M2/1‑147 (MQ=255)     ggATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgcgac                                                                                                                                                <  5:222812‑M2/148‑6 (MQ=255)      gATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACgcgacca                                                                                                                                              <  3:27636‑M2/149‑8 (MQ=255)        tGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATc                                                                                                                                            <  1:158006/149‑1 (MQ=255)             tCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGt                                                                                                                                       >  1:256691/1‑149 (MQ=255)                         gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAg                                                                                                                                  >  8:11781/1‑142 (MQ=255)                         gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAg                                                                                                                                  <  7:11781/142‑1 (MQ=255)                         gCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAACCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGc                                                                                                                           >  6:128181/1‑149 (MQ=255)                             gTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGt                                                                                                                       <  2:256691/149‑1 (MQ=255)                                          cGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTc                                                                                                                 >  5:206005/1‑142 (MQ=255)                                          cGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTc                                                                                                                 <  6:206005/142‑1 (MQ=255)                                            aGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGACAGGCAAGGTCAACCCGGTGATACCGGAGGCCACTGCCATGGTCGCCGCCCAAGAGATTGGCAACGACGCGACCATCGCCGTCGCAGGTAAACCCCGTAACTTCGAGCTCAAc                                                                                                        >  6:164901/1‑149 (MQ=255)                                                 cAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAt                                                                                                   >  3:204771/1‑149 (MQ=255)                                                  aaGCTCTGCAGCCGGGCTCTTCGATCATTCCAGGCAAGGTCAACCCGGGGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtg                                                                                                  <  6:165732/149‑1 (MQ=255)                                                  aaGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtg                                                                                                  <  4:27636/149‑1 (MQ=255)                                                    gCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGAtgct                                                                                                <  4:204771/149‑1 (MQ=255)                                                      tctGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCg                                                                                                                                           <  8:154373/104‑1 (MQ=255)                                                      tctGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCg                                                                                                                                           >  7:154373/1‑104 (MQ=255)                                                        tGCAGCCGGGCTCTTCGATCATGCCAGGCTAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCTGTAACTTCGAGCTGAACGTGAtgctgc                                                                                              <  5:164901/147‑1 (MQ=255)                                                                ggCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGc                                                                                    <  6:186677/149‑1 (MQ=255)                                                                 gCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGcc                                                                                   <  6:154631/149‑1 (MQ=255)                                                                 gCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGcc                                                                                   >  7:243672/1‑149 (MQ=255)                                                                     ttCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGc                                                                                >  3:12702/1‑148 (MQ=255)                                                                       cGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCaa                                                                              <  5:128181/148‑1 (MQ=255)                                                                            aTGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACctgc                                                                         <  8:85687/148‑1 (MQ=255)                                                                                   gCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAg                                                                  >  1:116429/1‑148 (MQ=255)                                                                                              ccGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGAt                                                      <  2:116429/149‑1 (MQ=255)                                                                                                                aCTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCtt                                    >  5:183770/1‑149 (MQ=255)                                                                                                                    cgatgGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccg                                                  >  5:63246‑M2/3‑32 (MQ=255)                                                                                                                    ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagtt                                 <  2:102479‑M2/148‑117 (MQ=255)                                                                                                                    ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccg                                      <  5:95010‑M2/143‑112 (MQ=255)                                                                                                                    ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccg                                      >  6:95010‑M2/1‑32 (MQ=255)                                                                                                                    ccATGGTCGCCGCCCAAGTGATTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccg                                                  <  6:63246‑M2/131‑100 (MQ=255)                                                                                                                    ccATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTg                                >  3:217088/1‑149 (MQ=255)                                                                                                                     cATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTgg                               <  6:222812/149‑1 (MQ=255)                                                                                                                      aTGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGc                              >  5:94097/1‑149 (MQ=255)                                                                                                                       tGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGcc                             <  6:183770/149‑1 (MQ=255)                                                                                                                           cgccgcCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACa                         <  8:243672/149‑1 (MQ=255)                                                                                                                             ccgccCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACaaa                       <  4:12702/149‑1 (MQ=255)                                                                                                                                        aTTGGCAACGACgcgaccatggcagtggcctccgggatcaccgggttgaccttgcctggcatgatcgaagagcccggctgcagagcttgcagctcgatttcgcccagaccggccagcgggccggagttcatccagcgcagatcgttgg             >  1:102479‑M2/1‑12 (MQ=255)                                                                                                                                           ggCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCtt         >  4:84527/1‑149 (MQ=255)                                                                                                                                             cAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTc        >  4:60321/1‑148 (MQ=255)                                                                                                                                              aaCGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTc        >  7:173614/1‑147 (MQ=255)                                                                                                                                              aaCGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTc        >  4:145603/1‑147 (MQ=255)                                                                                                                                                   cgcgACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTc  >  2:77814/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGCTGGATGAACTCCGGCCCGCTGGCCGGTCTGGGCGAAATCGAGCTGCAAGCTCTGCAGCCGGGCTCTTCGATCATGCCAGGCAAGGTCAACCCGGTGATCCCGGAGGCCACTGCCATGGTCGCCGCCCAAGTGATTGGCAACGACGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTC  >  NC_002947/1090010‑1090303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.