New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1181592 =	42 (0.990)	5 (0.120)	5/248	NT	10.8%	coding (645/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	1181631 =	42 (1.040)					coding (684/1407 nt)	cumA	multicopper oxidase

AGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGC  >  NC_002947/1181447‑1181727                                                                                                                                                  |                                                                                                                                        aGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGc                                                                                                                                      <  2:132579/149‑1 (MQ=255) aGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGc                                                                                                                                      <  4:73960/149‑1 (MQ=255)       gTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGcc                                                                                                                                <  4:110587/149‑1 (MQ=255)       gTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCAAGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCCCCATCAATGGCCAGGcc                                                                                                                                >  8:171568/1‑149 (MQ=255)               aCCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGAt                                                                                                                        <  5:77736/149‑1 (MQ=255)                     ttCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAg                                                                                                                                   <  4:106976/132‑1 (MQ=255)                     ttCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAg                                                                                                                                   >  3:106976/1‑132 (MQ=255)                       tccagcgcacgcggggtcaccgggttgccgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGc                                                                                                                <  7:132029‑M1/26‑1 (MQ=255)                                cgcggggtcaccgggttgccgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGCTgccggccg                                                                                                       >  6:165877‑M1/115‑149 (MQ=255)                                   tACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCggccggcc                                                                                                    <  6:111261/149‑1 (MQ=255)                                     ggtcaccgggttgccgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAg                                                                                                  >  8:132029‑M1/110‑149 (MQ=255)                                          aGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAggtggt                                                                                             >  6:148712/1‑149 (MQ=255)                                            ccTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgc                                                                                           <  4:103948/149‑1 (MQ=255)                                              tGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGCGCTGCCGGCCGGCCAGGTggtgcgg                                                                                         >  6:19766/1‑149 (MQ=255)                                              tGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                         >  6:15828/1‑149 (MQ=255)                                               gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                        >  6:175805/1‑149 (MQ=255)                                               gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                        >  5:129224/1‑149 (MQ=255)                                               gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                        >  1:27830/1‑149 (MQ=255)                                                aagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgggt                                                                                       <  5:175805/149‑1 (MQ=255)                                                   cgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGCTGccggccgg                                                                                                      >  7:83570‑M1/96‑131 (MQ=255)                                                   cgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGCTGccggccgg                                                                                                      <  8:83570‑M1/36‑1 (MQ=255)                                                   aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGgtggtg                                                                                            <  2:139900/141‑1 (MQ=255)                                                   aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGgtggtg                                                                                            >  1:139900/1‑141 (MQ=255)                                                   aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgggtgcg                                                                                    >  1:214392/1‑149 (MQ=255)                                                      tGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                         <  4:98936/141‑1 (MQ=255)                                                      tGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                         >  3:98936/1‑141 (MQ=255)                                                               gACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAAcc                                                                         <  8:156368/148‑1 (MQ=255)                                                                    gCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGAc                                                                    >  6:95095/1‑148 (MQ=255)                                                                      aGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAAt                                                                 <  8:24604/149‑1 (MQ=255)                                                                                 cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCctg                                                                                >  4:218321/1‑123 (MQ=255)                                                                                 cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCctg                                                                                <  3:218321/123‑1 (MQ=255)                                                                                 cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTa                                                      >  5:25501/1‑149 (MQ=255)                                                                                 cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCAGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGTACCTGGACAATACCTGGACCTa                                                      >  7:103659/1‑149 (MQ=255)                                                                                      tttCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCAGGACAATACCTGGACCTACAGc                                                  >  6:11505/1‑148 (MQ=255)                                                                                           gCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaac                                            <  2:79725/149‑1 (MQ=255)                                                                                                 cgcgcgAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaacctcaa                                       <  2:247184/148‑1 (MQ=255)                                                                                                 cgcgcgAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaacctc                                         >  1:247184/1‑146 (MQ=255)                                                                                                        ggCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACAATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACt                               >  5:123992/1‑149 (MQ=255)                                                                                                          ccGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                             <  5:148712/149‑1 (MQ=255)                                                                                                          ccGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                             <  6:129224/149‑1 (MQ=255)                                                                                                            gcgcgcAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                             >  7:247314/1‑147 (MQ=255)                                                                                                                  aaCGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgcgaggc                        >  4:254811/1‑146 (MQ=255)                                                                                                                  aaCGGCACTGCCGGGAGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgcgaggc                        >  3:6716/1‑146 (MQ=255)                                                                                                                         cTGCCGGGCGGTTGATCAGCTTCAATGGCCAGGCCGTCTCGATCACCGAGCTGCCGGCCGGCCAGGTTGTGCGTGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt              <  5:11505/149‑1 (MQ=255)                                                                                                                         cTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt              <  5:19766/149‑1 (MQ=255)                                                                                                                         cTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt              <  5:15828/149‑1 (MQ=255)                                                                                                                            ccGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATg             <  6:94199/147‑1 (MQ=255)                                                                                                                                  ggTTGATCTCCTTCAATGGCCAGGGCGACTCGATCAGAGAGCTGCCGGCCGGCTAGGTGGTGCGGGTGGGGCTGCTGAACCTGGACATTACCTTGTCCTTCCGCCTCAACCTCAAGGGCAACTGCGTGGGGAGAATCTTTGCCCTGGAc     <  2:27830/149‑1 (MQ=255)                                                                                                                                      gATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGc  <  2:214392/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        AGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGC  >  NC_002947/1181447‑1181727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.