New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1181592 =	42 (0.990)	5 (0.120)	5/248	NT	10.8%	coding (645/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	1181631 =	42 (1.040)					coding (684/1407 nt)	cumA	multicopper oxidase

CGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCCGCGTGCGCTGGACGAATACTGGCTAGGCC  >  NC_002947/1181483‑1181770                                                                                                                                                     |                                                                                                                                            ggtcaccgggttgccgtcgagggcatagattctcgcctcgcagttgcccttgaggttgaggcggtaggtccaggtattgtccaggttcagcaggcgcacccgcaccaccTGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAg                                                                                                                                             >  8:132029‑M1/110‑149 (MQ=255)      aGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAggtggt                                                                                                                                        >  6:148712/1‑149 (MQ=255)        ccTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgc                                                                                                                                      <  4:103948/149‑1 (MQ=255)          tGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGCGCTGCCGGCCGGCCAGGTggtgcgg                                                                                                                                    >  6:19766/1‑149 (MQ=255)          tGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                                                                    >  6:15828/1‑149 (MQ=255)           gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                                                                   >  1:27830/1‑149 (MQ=255)           gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                                                                   >  6:175805/1‑149 (MQ=255)           gaagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcggg                                                                                                                                   >  5:129224/1‑149 (MQ=255)            aagaaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgggt                                                                                                                                  <  5:175805/149‑1 (MQ=255)               aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGgtggtg                                                                                                                                       <  2:139900/141‑1 (MQ=255)               aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGgtggtg                                                                                                                                       >  1:139900/1‑141 (MQ=255)               aaCTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgggtgcg                                                                                                                               >  1:214392/1‑149 (MQ=255)                  tGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                                                                    >  3:98936/1‑141 (MQ=255)                  tGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTggtgcgg                                                                                                                                    <  4:98936/141‑1 (MQ=255)                           gACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAAcc                                                                                                                    <  8:156368/148‑1 (MQ=255)                                gCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGAc                                                                                                               >  6:95095/1‑148 (MQ=255)                                  aGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAAt                                                                                                            <  8:24604/149‑1 (MQ=255)                                             cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCctg                                                                                                                           <  3:218321/123‑1 (MQ=255)                                             cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCctg                                                                                                                           >  4:218321/1‑123 (MQ=255)                                             cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTa                                                                                                 >  5:25501/1‑149 (MQ=255)                                             cTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCAGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGTACCTGGACAATACCTGGACCTa                                                                                                 >  7:103659/1‑149 (MQ=255)                                                  tttCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCAGGACAATACCTGGACCTACAGc                                                                                             >  6:11505/1‑148 (MQ=255)                                                       gCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaac                                                                                       <  2:79725/149‑1 (MQ=255)                                                             cgcgcgAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaacctcaa                                                                                  <  2:247184/148‑1 (MQ=255)                                                             cgcgcgAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGcctcaacctc                                                                                    >  1:247184/1‑146 (MQ=255)                                                                    ggCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACAATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACt                                                                          >  5:123992/1‑149 (MQ=255)                                                                      ccGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                                                                        <  5:148712/149‑1 (MQ=255)                                                                      ccGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                                                                        <  6:129224/149‑1 (MQ=255)                                                                        gcgcgcAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgc                                                                        >  7:247314/1‑147 (MQ=255)                                                                              aaCGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgcgaggc                                                                   >  4:254811/1‑146 (MQ=255)                                                                              aaCGGCACTGCCGGGAGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgcgaggc                                                                   >  3:6716/1‑146 (MQ=255)                                                                                     cTGCCGGGCGGTTGATCAGCTTCAATGGCCAGGCCGTCTCGATCACCGAGCTGCCGGCCGGCCAGGTTGTGCGTGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt                                                         <  5:11505/149‑1 (MQ=255)                                                                                     cTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt                                                         <  5:15828/149‑1 (MQ=255)                                                                                     cTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTAt                                                         <  5:19766/149‑1 (MQ=255)                                                                                        ccGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATg                                                        <  6:94199/147‑1 (MQ=255)                                                                                              ggTTGATCTCCTTCAATGGCCAGGGCGACTCGATCAGAGAGCTGCCGGCCGGCTAGGTGGTGCGGGTGGGGCTGCTGAACCTGGACATTACCTTGTCCTTCCGCCTCAACCTCAAGGGCAACTGCGTGGGGAGAATCTTTGCCCTGGAc                                                <  2:27830/149‑1 (MQ=255)                                                                                                  gATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGc                                             <  2:214392/148‑1 (MQ=255)                                                                                                             ctggccggccggcagctcggtgatcgagtcggcctggccaGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGAcc                                 >  8:132029‑M2/41‑149 (MQ=255)                                                                                                                GCCAGGCCGACTCGATCACCGAGCTTCCGTCCGGCCAGGTGGTGCGTGTTCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGATGCGATAATCTATGCCCTCGACGGCAACCCGGTGAcccc                               >  6:123992‑M1/1‑148 (MQ=255)                                                                                                                 ccggccggcagctcggtgatcgagtcggcctggccaGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACg                                               <  8:83570‑M2/95‑1 (MQ=255)                                                                                                                 ccggccggcagctcggtgatcgagtcggcctggccaGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACg                                               >  7:83570‑M2/37‑131 (MQ=255)                                                                                                                  cggccggcagctcggtgatcgagtcggcctggccaGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCcgcg                            >  6:165877‑M2/36‑149 (MQ=255)                                                                                                                   aGGCCGACTCGCTCACCGCGCTGCCGGCCGGCGAGGTGGGGCGGGTGCGCCTGCTGAACCTGGACAATCCCTGGACCTCCCGCCTCAACCTCAACGGCAACTgcgaggcga                                                                 <  4:36034/111‑1 (MQ=255)                                                                                                                   aGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTgcgcggcga                                                                 >  3:36034/1‑111 (MQ=255)                                                                                                                        gACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCACGACGGCCACCCGGTGACCCCGCCTGCGCt                      >  8:94566/1‑149 (MQ=255)                                                                                                                           gctcggtgatcgagtcggcctggccaGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCCGCGTGCGCTGGa                   <  7:132029‑M2/123‑1 (MQ=255)                                                                                                                             gATAACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCAGAACCTGGACAATCCCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCCACGGCACCCCGGTGACCCCGCGTGCGCTGGAc                  >  2:153539/1‑148 (MQ=255)                                                                                                                                 aCCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGAc                                                                                                               >  7:154724/1‑51 (MQ=255)                                                                                                                                 aCCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAAAAAATTACCAAGACGGCAACCCGGTGACCCCCCGTGCGCTGGGAGAAt              >  1:89565/1‑148 (MQ=255)                                                                                                                                           cggccggcCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTGAACCTCAAGGTCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCCGCGTGCGCTGGACGAATACTGGCTAGGc   <  8:103659/149‑1 (MQ=255)                                                                                                                                            ggccggccAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCCGCGTGCGCTGGACGAATACTGGCTAGGcc  >  4:209378/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            CGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCATCAATGGCCAGGCCGACTCGATCACCGAGCTGCCGGCCGGCCAGGTGGTGCGGGTGCGCCTGCTGAACCTGGACAATACCTGGACCTACCGCCTCAACCTCAAGGGCAACTGCGAGGCGAGAATCTATGCCCTCGACGGCAACCCGGTGACCCCGCGTGCGCTGGACGAATACTGGCTAGGCC  >  NC_002947/1181483‑1181770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.