New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1522319 =	42 (0.990)	3 (0.070)	3/246	NT	7.2%	coding (227/1215 nt)	ftsW	lipid II flippase
	?	NC_002947	1522355 =	37 (0.920)					coding (263/1215 nt)	ftsW	lipid II flippase

CCGGTTGCCTGGCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCT  >  NC_002947/1522172‑1522459                                                                                                                                                    |                                                                                                                                             ccGGTTGCCTGGCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAAcc                                                                                                                                             <  2:64167/149‑1 (MQ=255)       gcctggcctgGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTg                                                                                                                                       <  8:114134/149‑1 (MQ=255)        ccTGGCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTgg                                                                                                                                      >  3:132323/1‑149 (MQ=255)        ccTGGCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTgg                                                                                                                                      >  2:175463/1‑149 (MQ=255)            gCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGc                                                                                                                                   <  4:132323/148‑1 (MQ=255)                       cctgggcctggTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCt                                                                                                                       >  2:8879/1‑149 (MQ=255)                                 gTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCAt                                                                                                             >  4:184605/1‑149 (MQ=255)                                       atCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCt                                                                                                        <  1:175463/148‑1 (MQ=255)                                        tCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTTCCGATCGCCACCTGGCAGCGCATGGGCTTc                                                                                                      <  5:235640/149‑1 (MQ=255)                                          aagaagctgaaaccgatccagcgcatggagccgttgacctcacggccgatacccggcaccagcaccagtaccagcaagccgaaagcgccaagcagcatcatgaagcCCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCa                                                                                                     >  3:106139‑M1/107‑148 (MQ=255)                                              cGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCatga                                                                                                  <  4:243289/147‑1 (MQ=255)                                                gCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGt                                                                                                                                     >  6:185554/1‑110 (MQ=255)                                                gCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGt                                                                                                                                     <  5:185554/110‑1 (MQ=255)                                                  ctcctcGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGAtgctgc                                                                                            >  8:112382/1‑149 (MQ=255)                                                               gCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCgg                                                                               >  7:55369/1‑149 (MQ=255)                                                               gCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCg                                                                                <  3:250419/148‑1 (MQ=255)                                                                    ggTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGc                                                                          >  1:174458/1‑149 (MQ=255)                                                                      tACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                        <  3:184605/149‑1 (MQ=255)                                                                        cAGTCCTGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATTGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTgg                                                                       <  4:172969/148‑1 (MQ=255)                                                                           tCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                        <  3:225291/144‑1 (MQ=255)                                                                           tCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                        >  4:225291/1‑144 (MQ=255)                                                                             cGGCAACCCGCTGTATCACATGTTTCGCCACCTTGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActgg                                                                 <  7:240772/149‑1 (MQ=255)                                                                             cGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActg                                                                  <  1:8879/148‑1 (MQ=255)                                                                               gCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActggtg                                                               >  2:152920/1‑149 (MQ=255)                                                                                    ccGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActggtgctggt                                                          >  7:93037/1‑149 (MQ=255)                                                                                              acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCgg                                                     >  6:83119/1‑144 (MQ=255)                                                                                              acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCgg                                                     <  5:83119/144‑1 (MQ=255)                                                                                              acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGt                                                   <  1:81188/146‑1 (MQ=255)                                                                                               caTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCg                                               >  2:116627/1‑149 (MQ=255)                                                                                               caTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCg                                               >  2:159055/1‑149 (MQ=255)                                                                                                       gCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAg                                       <  2:215452/149‑1 (MQ=255)                                                                                                                  tACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCt                             >  5:58570/1‑148 (MQ=255)                                                                                                                        ttCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATgc                       >  7:33951/1‑148 (MQ=255)                                                                                                                        ttCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATgc                       <  8:33951/148‑1 (MQ=255)                                                                                                                          gaaagcgccaagcagcatcatgaagcCCATGCTGGTGCCGATCGCCACCTGGCAGCGCATg                                                                                                            >  7:88102‑M1/27‑61 (MQ=255)                                                                                                                          gaaagcgccaagcagcatcatgaagcCCATGCTGGTGCCGATCGCCACCTGGCAGCGCATg                                                                                                            <  8:88102‑M1/35‑1 (MQ=255)                                                                                                                           cTTGGCCTGGTGGCCTGTGGTGGAACCATGCTGGTGCCGATCTCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCt                    <  6:58570/148‑1 (MQ=255)                                                                                                                             tGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTTCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTTCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGa                 >  1:119421/1‑149 (MQ=255)                                                                                                                                    gtggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGCTCAACGGCTCCATGCGCTGGATCGGttt          <  1:152920/149‑1 (MQ=255)                                                                                                                                     tggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTc         <  7:112382/149‑1 (MQ=255)                                                                                                                                     tggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTc         <  8:93037/149‑1 (MQ=255)                                                                                                                                       gCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAg       <  1:116627/149‑1 (MQ=255)                                                                                                                                          tgtgGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGctt    >  7:26877/1‑149 (MQ=255)                                                                                                                                            tggtgCAACCATGCTGGTGCCGATCGCGACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGcttct  <  1:159055/149‑1 (MQ=255)                                                                                                                                              gtgCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGa                                        >  2:237471/1‑109 (MQ=255)                                                                                                                                              gtgCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGa                                        <  1:237471/109‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             CCGGTTGCCTGGCCTTGCTGGGCCTGGGCCTGGTGATGATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCT  >  NC_002947/1522172‑1522459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.