New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1522319 =	42 (0.990)	3 (0.070)	3/246	NT	7.2%	coding (227/1215 nt)	ftsW	lipid II flippase
	?	NC_002947	1522355 =	37 (0.920)					coding (263/1215 nt)	ftsW	lipid II flippase

ATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCTTCAACGTGCAGCCTTCGG  >  NC_002947/1522210‑1522477                                                                                                                                                  |                                                                                                                           atCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCt                                                                                                                          <  1:175463/148‑1 (MQ=255)  tCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTTCCGATCGCCACCTGGCAGCGCATGGGCTTc                                                                                                                        <  5:235640/149‑1 (MQ=255)    aagaagctgaaaccgatccagcgcatggagccgttgacctcacggccgatacccggcaccagcaccagtaccagcaagccgaaagcgccaagcagcatcatgaagcCCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCa                                                                                                                       >  3:106139‑M1/107‑148 (MQ=255)        cGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCatga                                                                                                                    <  4:243289/147‑1 (MQ=255)            ctcctcGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGAtgctgc                                                                                                              >  8:112382/1‑149 (MQ=255)                         gCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCgg                                                                                                 >  7:55369/1‑149 (MQ=255)                         gCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCg                                                                                                  <  3:250419/148‑1 (MQ=255)                              ggTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGc                                                                                            >  1:174458/1‑149 (MQ=255)                                tACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                                          <  3:184605/149‑1 (MQ=255)                                  cAGTCCTGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATTGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTgg                                                                                         <  4:172969/148‑1 (MQ=255)                                     tCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                                          >  4:225291/1‑144 (MQ=255)                                     tCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTg                                                                                          <  3:225291/144‑1 (MQ=255)                                       cGGCAACCCGCTGTATCACATGTTTCGCCACCTTGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActgg                                                                                   <  7:240772/149‑1 (MQ=255)                                       cGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActg                                                                                    <  1:8879/148‑1 (MQ=255)                                         gCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActggtg                                                                                 >  2:152920/1‑149 (MQ=255)                                              ccGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTActggtgctggt                                                                            >  7:93037/1‑149 (MQ=255)                                                        acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCgg                                                                       >  6:83119/1‑144 (MQ=255)                                                        acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCgg                                                                       <  5:83119/144‑1 (MQ=255)                                                        acaTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGt                                                                     <  1:81188/146‑1 (MQ=255)                                                         caTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCg                                                                 >  2:159055/1‑149 (MQ=255)                                                         caTGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCg                                                                 >  2:116627/1‑149 (MQ=255)                                                                 gCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAg                                                         <  2:215452/149‑1 (MQ=255)                                                                            tACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCt                                               >  5:58570/1‑148 (MQ=255)                                                                                  ttCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATgc                                         >  7:33951/1‑148 (MQ=255)                                                                                  ttCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATgc                                         <  8:33951/148‑1 (MQ=255)                                                                                     cTTGGCCTGGTGGCCTGTGGTGGAACCATGCTGGTGCCGATCTCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCt                                      <  6:58570/148‑1 (MQ=255)                                                                                       tGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTTCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTTCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGa                                   >  1:119421/1‑149 (MQ=255)                                                                                              gtggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGCTCAACGGCTCCATGCGCTGGATCGGttt                            <  1:152920/149‑1 (MQ=255)                                                                                               tggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTc                           <  8:93037/149‑1 (MQ=255)                                                                                               tggCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTc                           <  7:112382/149‑1 (MQ=255)                                                                                                 gCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAg                         <  1:116627/149‑1 (MQ=255)                                                                                                    tgtgGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGctt                      >  7:26877/1‑149 (MQ=255)                                                                                                      tggtgCAACCATGCTGGTGCCGATCGCGACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGcttct                    <  1:159055/149‑1 (MQ=255)                                                                                                        tgaagcccatgcgctgccaggtggcgatcggcaccagcatggGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGcttctt                   >  3:106139‑M2/43‑148 (MQ=255)                                                                                                        gtgCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGa                                                          <  1:237471/109‑1 (MQ=255)                                                                                                        gtgCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGa                                                          >  2:237471/1‑109 (MQ=255)                                                                                                               catgcgctgccaggtggcgatcggcaccagcatggGCTTCATGATGCTGCTTGGCGCTTTc                                                                                                   >  7:88102‑M2/36‑61 (MQ=255)                                                                                                               catgcgctgccaggtggcgatcggcaccagcatggGCTTCATGATGCTGCTTGGCGCTTTc                                                                                                   <  8:88102‑M2/26‑1 (MQ=255)                                                                                                               CATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGa                                                          >  6:109177‑M1/1‑102 (MQ=255)                                                                                                               CATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCTTCAACGTg            <  2:65655‑M1/148‑1 (MQ=255)                                                                                                                      gTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGttt                            >  2:163538/1‑125 (MQ=255)                                                                                                                      gTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGttt                            <  1:163538/125‑1 (MQ=255)                                                                                                                      gTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTGCTTCAACGTGCAGCCTTc    <  8:55369/149‑1 (MQ=255)                                                                                                                         ccGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCTTCAACGTGCAGCCTTCgg  <  2:174458/148‑1 (MQ=255)                                                                                                                         ccGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGACGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCTTCAACGTGCAGCCGTCgg  >  7:188692/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                           ATCACTTCGGCCTCCTCGGAAGTGGCTGCGGTACAGTCCGGCAACCCGCTGTATCACATGTTTCGCCACCTGGTGTACGTGTTCCTTGGCCTGGTGGCCTGTGGTGCAACCATGCTGGTGCCGATCGCCACCTGGCAGCGCATGGGCTTCATGATGCTGCTTGGCGCTTTCGGCTTGCTGGTACTGGTGCTGGTGCCGGGTATCGGCCGTGAGGTCAACGGCTCCATGCGCTGGATCGGTTTCAGCTTCTTCAACGTGCAGCCTTCGG  >  NC_002947/1522210‑1522477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.