New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1588596 =	35 (0.830)	3 (0.080)	3/242	NT	8.5%	coding (503/876 nt)	PP_1393	transcriptional regulator
	?	NC_002947	1588641 =	32 (0.810)					coding (458/876 nt)	PP_1393	transcriptional regulator

ATGCTGTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGT  >  NC_002947/1588448‑1588729                                                                                                                                                     |                                                                                                                                       aTGCTGTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACg                                                                                                                                        <  1:387/149‑1 (MQ=255)  gctgctgccgcgtctgatggagtggcaggcactgcgcccggacgtaccggtggagctgaccacgaccgtgcagcacggggtggatttgcggcgcgagggcttcgatgcggcagtggtctacggcgatgcaccgaaccacgggctgcagg                                                                                                                                       <  4:174150‑M1/2‑1 (MQ=255)    cTGTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCATGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGt                                                                                                                                      <  2:32756/148‑1 (MQ=255)     tGTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTgc                                                                                                                                    >  1:105874/1‑149 (MQ=255)      gTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTgcg                                                                                                                                   >  2:82134/1‑149 (MQ=255)              ccATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTgc                                                                                                                                    >  7:152782/1‑140 (MQ=255)              ccATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTgc                                                                                                                                    <  8:152782/140‑1 (MQ=255)                       gCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAgctg                                                                                                                  >  2:4455/1‑149 (MQ=255)                         cAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCCCACAGGGGTCAgctgct                                                                                                                >  5:22877/1‑149 (MQ=255)                         cAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAgctgc                                                                                                                 >  5:114871/1‑148 (MQ=255)                           gCGGCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGTGCACACAGGGGTCAGCTGCTCa                                                                                                              <  6:191859/149‑1 (MQ=255)                             gTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATc                                                                                                            <  7:78643/149‑1 (MQ=255)                             gTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATc                                                                                                            >  8:78643/1‑149 (MQ=255)                                 ttCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGaa                                                                                                         >  6:135426/1‑148 (MQ=255)                                 ttCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAAc                                                                                                        <  7:42359/149‑1 (MQ=255)                                  tCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGACTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGaa                                                                                                         >  4:136381/1‑147 (MQ=255)                                       ccgccTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTg                                                                                                  >  4:20285/1‑149 (MQ=255)                                         ggacgtaccggtggagctgaccacgaccgtgcagcacggggtggatttgcggcgcgagggcttcgatgcggcagtggtctacggcgatgcaccgaaccacgggctgcaGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTgcg                                                                                                <  8:87466‑M1/41‑1 (MQ=255)                                            cgtaccggtggagctgaccacgaccgtgcagcacggggtggatttgcggcgcgagggcttcgatgcggcagtggtctacggcgatgcaccgaaccacgggctgcaGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCAc                                                                                             >  7:87466‑M1/106‑149 (MQ=255)                                              cAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCGCTTCACGCAGTGACGGTGCGCACACATGGGTCAGCTGCTCATCGAACAGCTTGCGCAcc                                                                                            <  2:101578/148‑1 (MQ=255)                                              cAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCt                                                                                           >  2:191738/1‑149 (MQ=255)                                              cAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCt                                                                                           <  5:182823/149‑1 (MQ=255)                                                 cggtggagctgaccacgaccgtgcagcacggggtggatttgcggcgcgagggcttcgatgcggcagtggtctacggcgatgcaccgaaccacgggctgcaGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCa                                                                                        >  8:204483‑M1/101‑149 (MQ=255)                                                    caACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAgg                                                                                                                           <  1:127687/111‑1 (MQ=255)                                                    caACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAgg                                                                                                                           >  2:127687/1‑111 (MQ=255)                                                     aaCCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGccc                                                                                    <  5:135426/149‑1 (MQ=255)                                                            aGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTc                                                                             <  8:3245/149‑1 (MQ=255)                                                                gtgtTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGt                                                                          <  8:238121/148‑1 (MQ=255)                                                                       tCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGcc                                                                  <  1:82134/149‑1 (MQ=255)                                                                                 gATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACt                                                        <  3:20285/149‑1 (MQ=255)                                                                                                  cTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTc                                      >  4:59047/1‑149 (MQ=255)                                                                                                     gCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTcgcg                                   >  2:197831/1‑149 (MQ=255)                                                                                                     gCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTcgcg                                   <  1:197831/149‑1 (MQ=255)                                                                                                      ccAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCgcgc                                  >  2:260687/1‑149 (MQ=255)                                                                                                             ttCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAAt                           >  7:14881/1‑149 (MQ=255)                                                                                                               ccACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCaaa                            <  1:260687/146‑1 (MQ=255)                                                                                                                     gctgcAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCg                   >  1:171194/1‑149 (MQ=255)                                                                                                                                 ccGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc       <  3:59047/149‑1 (MQ=255)                                                                                                                                  cGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTGCCCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc       <  1:191738/149‑1 (MQ=255)                                                                                                                                    gCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTg    >  1:252754/1‑149 (MQ=255)                                                                                                                                     cccTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTgg   <  8:14881/149‑1 (MQ=255)                                                                                                                                     cccTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTgc   >  6:73441/1‑148 (MQ=255)                                                                                                                                        ttCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGt  >  7:60409/1‑147 (MQ=255)                                                                                                                                        ttCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGt  >  1:76175/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                       ATGCTGTTTGGGTCCATGCGTGGCCAGCGTCATTCCAGCCGCCTGCAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGT  >  NC_002947/1588448‑1588729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.