New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1588596 =	35 (0.830)	3 (0.080)	3/242	NT	8.5%	coding (503/876 nt)	PP_1393	transcriptional regulator
	?	NC_002947	1588641 =	32 (0.810)					coding (458/876 nt)	PP_1393	transcriptional regulator

CAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGACGCGGCAGCAGC  >  NC_002947/1588493‑1588787                                                                                                                                                     |                                                                                                                                                    cAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCt                                                                                                                                                     <  5:182823/149‑1 (MQ=255) cAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCt                                                                                                                                                     >  2:191738/1‑149 (MQ=255)    cggtggagctgaccacgaccgtgcagcacggggtggatttgcggcgcgagggcttcgatgcggcagtggtctacggcgatgcaccgaaccacgggctgcaGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCa                                                                                                                                                  >  8:204483‑M1/101‑149 (MQ=255)        aaCCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGccc                                                                                                                                              <  5:135426/149‑1 (MQ=255)               aGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTc                                                                                                                                       <  8:3245/149‑1 (MQ=255)                   gtgtTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGt                                                                                                                                    <  8:238121/148‑1 (MQ=255)                          tCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGcc                                                                                                                            <  1:82134/149‑1 (MQ=255)                                    gATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACt                                                                                                                  <  3:20285/149‑1 (MQ=255)                                                     cTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTc                                                                                                >  4:59047/1‑149 (MQ=255)                                                        gCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTcgcg                                                                                             >  2:197831/1‑149 (MQ=255)                                                        gCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTcgcg                                                                                             <  1:197831/149‑1 (MQ=255)                                                         ccAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCgcgc                                                                                            >  2:260687/1‑149 (MQ=255)                                                                ttCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAAt                                                                                     >  7:14881/1‑149 (MQ=255)                                                                  ccACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCaaa                                                                                      <  1:260687/146‑1 (MQ=255)                                                                        gctgcAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCg                                                                             >  1:171194/1‑149 (MQ=255)                                                                                    ccGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc                                                                 <  3:59047/149‑1 (MQ=255)                                                                                     cGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTGCCCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc                                                                 <  1:191738/149‑1 (MQ=255)                                                                                       gCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTg                                                              >  1:252754/1‑149 (MQ=255)                                                                                        cccTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTgg                                                             <  8:14881/149‑1 (MQ=255)                                                                                        cccTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTgc                                                             >  6:73441/1‑148 (MQ=255)                                                                                           ttCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGt                                                            >  1:76175/1‑147 (MQ=255)                                                                                           ttCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGt                                                            >  7:60409/1‑147 (MQ=255)                                                                                                    tgcaggtgcgcaagctgttcgatgagcagctgacccctgtgtgcgcaccTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCg                                                 >  8:204483‑M2/50‑149 (MQ=255)                                                                                                         gtgcgcaagctgttcgatgagcagctgacccctgtgtgcgcaccTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACg                                            >  7:87466‑M2/45‑149 (MQ=255)                                                                                                            cgcaagctgttcgatgagcagctgacccctgtgtgcgcaccTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTcc                                         <  8:87466‑M2/108‑1 (MQ=255)                                                                                                             GCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCAGCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGGCAGCTCCACCGGTACGTCCg                                        >  6:22877‑M1/1‑149 (MQ=255)                                                                                                              CACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCgg                                       >  3:239269‑M1/1‑149 (MQ=255)                                                                                                               ACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCggg                                      >  2:76175‑M1/1‑149 (MQ=255)                                                                                                                           gctgctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGtgcctgc                          >  3:174150/1‑149 (MQ=255)                                                                                                                            ctgctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc                                                                 <  7:158169/109‑1 (MQ=255)                                                                                                                            ctgctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTc                                                                 >  8:158169/1‑109 (MQ=255)                                                                                                                              gctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGtgcctgcccc                       >  5:154433/1‑147 (MQ=255)                                                                                                                              gctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCa                        >  1:229817/1‑148 (MQ=255)                                                                                                                               ctCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACt                      >  2:219802/1‑149 (MQ=255)                                                                                                                                  aTCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCAc                                                   >  1:8240/1‑117 (MQ=255)                                                                                                                                  aTCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCAc                                                   <  2:8240/117‑1 (MQ=255)                                                                                                                                  aTCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCa                   >  6:92359/1‑149 (MQ=255)                                                                                                                                  aTCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCa                   <  2:171194/149‑1 (MQ=255)                                                                                                                                  aTCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGAGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTcc                    >  3:4586/1‑148 (MQ=255)                                                                                                                                   tCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCAt                  <  2:252754/149‑1 (MQ=255)                                                                                                                                      aaCAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCCCTCCAt                  >  1:134120/1‑146 (MQ=255)                                                                                                                                          gCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGAcgc           <  6:114871/149‑1 (MQ=255)                                                                                                                                           cTTGCGCACCTGCAGCCGGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGAcgcg          <  3:136381/149‑1 (MQ=255)                                                                                                                                           cTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCGGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGAcgcg          >  7:93594/1‑149 (MQ=255)                                                                                                                                                   ccTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGACGCGGCagcagc  <  4:174150‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAACCACAACCGCCAGTCGTGTTCATCCCGCGAGGGATGCAGCAGCATGTGCCTGGCCAGGTCTTCCACCTGCTGCAACGGCACCGGCCCTTCACGCAGTGACGGTGCGCACACAGGGGTCAGCTGCTCATCGAACAGCTTGCGCACCTGCAGCCCGTGGTTCGGTGCATCGCCGTAGACCACTG‑CCGCATCGAAGCCCTCGCGCCGCAAATCCACCCCGTGCTGCACGGTCGTGGTCAGCTCCACCGGTACGTCCGGGCGCAGTGCCTGCCACTCCATCAGACGCGGCAGCAGC  >  NC_002947/1588493‑1588787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.