New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1688514 =	39 (0.920)	3 (0.070)	3/248	NT	7.2%	coding (1023/1032 nt)	ydcT	polyamine ABC transporter ATP‑binding protein
	?	NC_002947	1688577 =	40 (0.990)					coding (960/1032 nt)	ydcT	polyamine ABC transporter ATP‑binding protein

AAGCCCTGCCACAGCAGGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAGCTGCAGTTCGTAGC  >  NC_002947/1688367‑1688662                                                                                                                                                     |                                                                                                                                                      aaGCCCTGCCACAGCAGGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCt                                                                                                                                                      >  1:102624/1‑149 (MQ=255)    cccTGCCACAGCAGGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCgg                                                                                                                                                   <  5:239479/149‑1 (MQ=255)    cccTGCCACAGCAGGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGATCATGTCAGCGGCCCTCgg                                                                                                                                                   >  6:259858/1‑149 (MQ=255)     catgaggtacaggtcagcggcgtgctgcacgatgtccagtaccaaggcagcgccacccgctacgaactgcagctggacaacggtcaactgctggcagtaagccaggccaatgaccgctggcagaagcagatgcaggcctggcagCTCgg                                                                                                                                                   >  7:185830‑M1/145‑149 (MQ=255)     catgaggtacaggtcagcggcgtgctgcacgatgtccagtaccaaggcagcgccacccgctacgaactgcagctggacaacggtcaactgctggcagtaagccaggccaatgaccgctggcagaagcagatgcaggcctggcagCTCgg                                                                                                                                                   >  1:100759‑M1/145‑149 (MQ=255)             agcagGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGtt                                                                                                                                                 >  4:44351/1‑142 (MQ=255)             agcagGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGtt                                                                                                                                                 <  3:44351/142‑1 (MQ=255)                   ttCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCg                                                                                                                                    >  6:98781/1‑149 (MQ=255)                      agcagcGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCa                                                                                                                                 >  4:238824/1‑149 (MQ=255)                       gcagcGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCAt                                                                                                                                <  8:162908/149‑1 (MQ=255)                       gcagcGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTCTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCAt                                                                                                                                >  5:234447/1‑149 (MQ=255)                                 cAGTTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTAGAGCAGGTTGGACAGGGTGAGCAGTGTGCTGATGTCAGCGGCCCGCGGTTTCCTGCAGCACCGTCATGGCCTCGCgg                                                                                                                      >  7:54091/1‑149 (MQ=255)                                         tCGCGCCGAACCAGGTCAGCGGCGGGATGCAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCt                                                                                                                                             >  1:153291/1‑119 (MQ=255)                                         tCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCt                                                                                                                                             <  2:153291/118‑1 (MQ=255)                                                   ccAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAgg                                                                                                   >  4:148558/1‑149 (MQ=255)                                                    cAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGc                                                                                                  <  8:134240/149‑1 (MQ=255)                                                         cAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGGCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGc                                                                                             <  5:70811/149‑1 (MQ=255)                                                                  gAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGGTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGc                                                                                    <  5:98781/149‑1 (MQ=255)                                                                   cgaactgcagctggacaacggtcaactgctggcagtaagccaggccaatgaccgctggcagaagcagatgcaggcctggcagCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGc                                                                                    >  6:130737‑M1/83‑149 (MQ=255)                                                                    t‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGc                                                                                    >  4:117372/1‑147 (MQ=255)                                                                       aaCAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCa                                                                                                     >  6:197390/1‑128 (MQ=255)                                                                       aaCAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCa                                                                                                     <  5:197390/128‑1 (MQ=255)                                                                          acctgTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCt                                                                             <  5:237507/145‑1 (MQ=255)                                                                               tGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCt                                                                             >  6:237507/1‑144 (MQ=255)                                                                               tGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATc                                                                        >  8:72759/1‑149 (MQ=255)                                                                                 acaacggtcaactgctggcagtaagccaggccaatgaccgctggcagaagcagatgcaggcctggcagCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGcc                                                                                   <  1:95761‑M1/68‑1 (MQ=255)                                                                                 acaacggtcaactgctggcagtaagccaggccaatgaccgctggcagaagcagatgcaggcctggcagCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGcc                                                                                   >  2:95761‑M1/69‑136 (MQ=255)                                                                                  cAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGc                                                                     >  5:108193/1‑149 (MQ=255)                                                                                     gTAGAGGTTGGGGCGCCGGTACTGCAGGTTGGTGATGGTGGGCAGTGTGCTCATGTCTGCGGCCCTCGGTTTCCAGCTGCAGCGTCATTGCCTCGCGGGG‑CCAGTTCGGGTGAAGGCGTTGCCCGTGCTGCCAGGCCTGCATCTGCtt                                                                   <  8:54091/148‑1 (MQ=255)                                                                                      tACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCt                                                                 <  5:63073/149‑1 (MQ=255)                                                                                           gTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGtt                                                                                                                                                 >  2:233912/1‑65 (MQ=255)                                                                                           gTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGtt                                                                                                                                                 <  1:233912/65‑1 (MQ=255)                                                                                           gTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGGCCCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAg                                                                                 <  1:32160/129‑1 (MQ=255)                                                                                           gTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAg                                                                                 >  2:32160/1‑128 (MQ=255)                                                                                            ttGGGGCGCCGGAACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGc                                                           <  3:207470/149‑1 (MQ=255)                                                                                                    ccGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTg                                                   <  2:102624/149‑1 (MQ=255)                                                                                                                gTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTg                                                   <  7:248626/137‑1 (MQ=255)                                                                                                                gTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTg                                                   >  8:248626/1‑137 (MQ=255)                                                                                                                 ttGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGACCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCACGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTAACTg                                      >  2:66924/1‑149 (MQ=255)                                                                                                                        gggTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCcagcag                               <  3:117372/149‑1 (MQ=255)                                                                                                                            gcgcAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGa                           >  5:246547/1‑149 (MQ=255)                                                                                                                             cgcAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGa                           <  6:108193/148‑1 (MQ=255)                                                                                                                                  tgtgCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTg                     <  7:72759/149‑1 (MQ=255)                                                                                                                                       tCATGTCTGCGTCCCTCGGTTTCCTGCTGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGGCTGGAGGCGTTGCACGTGCTGCCAGGCCTGCATCTGCTTATTCCATCGGTCATTTGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAg                <  1:66924/149‑1 (MQ=255)                                                                                                                                       tCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTc                   >  8:146030/1‑146 (MQ=255)                                                                                                                                            tCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAGCTGCa           <  3:238824/149‑1 (MQ=255)                                                                                                                                               gCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAGCTGCAGtt        <  6:246547/149‑1 (MQ=255)                                                                                                                                                     CTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAGCTGCAGTTCGTAGc  <  8:83294‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AAGCCCTGCCACAGCAGGTTCAGCAGCGAGCCCAGGTAAATCGCGCCGAACCAGGTCAGCGGCGGGAT‑CAACAGCAGTGCCAGGTACAGGTTGGGGCGCCGGTACAGCAGGTTGGACAGGGTGCGCAGTGTGCTCATGTCAGCGGCCCTCGGTTTCCTGCAGCACCGTCATGGCCTCGCGGGG‑CCAGTGCGCCTGCAGGCGTTGCCCGAGCTGCCAGGCCTGCATCTGCTTCTGCCAGCGGTCATTGGCCTGGCTTACTGCCAGCAGTTGACCGTTGTCCAGCTGCAGTTCGTAGC  >  NC_002947/1688367‑1688662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.