New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057795 =	34 (0.810)	4 (0.100)	4/250	NT	11.1%	intergenic (+11/+117)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057893 =	31 (0.760)					intergenic (+109/+19)	PP_1832/PP_1833	oxidase/hypothetical protein

GGACGCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCT  >  NC_002947/2057648‑2057940                                                                                                                                                    |                                                                                                                                                  ggACGCGGCGCTGGGTTGAGTTGGGTGATACACAGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTgccgg                                                                                                                                                  >  2:82316/1‑149 (MQ=255)   agtgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactGGcc                                                                                                                                                <  5:40323‑M1/4‑1 (MQ=255)    cgcgGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTgccggccg                                                                                                                                               <  2:22704/149‑1 (MQ=255)       ggcgCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTgccggc                                                                                                                                                 <  3:137109/144‑1 (MQ=255)       ggcgCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTgccggc                                                                                                                                                 >  4:137109/1‑144 (MQ=255)            tGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCgg                                                                                                                                       <  3:136375/149‑1 (MQ=255)                  tcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactGGCCGCTTCGCGGGTGAAc                                                                                                                                 <  4:117795‑M1/19‑1 (MQ=255)                   aGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAAcc                                                                                                                                <  6:86091/149‑1 (MQ=255)                     ttGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCg                                                                                                                              >  3:53906/1‑149 (MQ=255)                             tACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTAc                                                                                                                       <  4:53906/148‑1 (MQ=255)                              acacCGTTTTGCCTGGCGTTACGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAt                                                                                                                     <  3:34404/149‑1 (MQ=255)                               cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAtt                                                                                                                    <  1:16980/149‑1 (MQ=255)                               cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGATGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAtt                                                                                                                    >  2:16980/1‑149 (MQ=255)                                acCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTAcgacc                                                                                                                   >  4:164111/1‑145 (MQ=255)                                acCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAtt                                                                                                                    >  1:63207/1‑148 (MQ=255)                                        gCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGt                                                                                                                                     <  7:74931/123‑1 (MQ=255)                                        gCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGt                                                                                                                                     >  8:74931/1‑123 (MQ=255)                                         ccTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTgc                                                                                                              >  8:230739/1‑145 (MQ=255)                                             gCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGc                                                                                                       <  2:63207/148‑1 (MQ=255)                                                   cgcTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAgg                                                                                                 <  5:1119/148‑1 (MQ=255)                                                          aTGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCCCGCCGACATTGAAAGCGCGATGCCGAAGGGCGgcgc                                                                                          >  2:153667/1‑148 (MQ=255)                                                           tGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTTAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa                                                                                        >  8:149507/1‑149 (MQ=255)                                                              cagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCg                                                                                     <  8:199163‑M1/63‑1 (MQ=255)                                                                   aGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCgtcggt                                                                                <  1:249637/149‑1 (MQ=255)                                                                        ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGggcgg                                                                                             <  3:162527/131‑1 (MQ=255)                                                                        ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGggcgg                                                                                             >  4:162527/1‑131 (MQ=255)                                                                           aTGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAAACCGCGACGACATTTACTTCGCGATGACTAAAGGCGGCGCCACCGTCGGTCGTAagag                                                                        >  4:146706/1‑149 (MQ=255)                                                                            tcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGc                                                                       >  3:117795‑M1/73‑149 (MQ=255)                                                                              atctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCgg                                                                     >  7:199163‑M1/71‑149 (MQ=255)                                                                                ggCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGt                                                                   <  7:230739/149‑1 (MQ=255)                                                                                 gcgcGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGc                                                                       <  4:2464/144‑1 (MQ=255)                                                                                 gcgcGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGc                                                                       >  3:2464/1‑144 (MQ=255)                                                                                 gcgcGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGtt                                                                  <  8:184294/149‑1 (MQ=255)                                                                                            gggCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTaa                                                                                                   >  1:131612/1‑105 (MQ=255)                                                                                            gggCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTaa                                                                                                   <  2:131612/105‑1 (MQ=255)                                                                                                  tgtgACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCa                                                 <  1:82316/149‑1 (MQ=255)                                                                                                  tgggACTGCGCGGGCATTTCTTGGTAGCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGAAGGAGCGGGTTCACCCGCGAAGAGGCCa                                                 <  1:153667/146‑1 (MQ=255)                                                                                                            cgGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCaa                                       <  2:4765/149‑1 (MQ=255)                                                                                                                          tATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAgg                                          <  3:101390/132‑1 (MQ=255)                                                                                                                              gacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTa                      <  7:149507/148‑1 (MQ=255)                                                                                                                                cgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGt                   <  7:119892/149‑1 (MQ=255)                                                                                                                                      gTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCCCTCCGACATTGACAGCGCGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAGGAGCCGGTTGACCCGCGAAGAGGCCAGTTAAGGCAATACACCCCACAGCCGTTGGGCggcaa             >  8:61672/1‑149 (MQ=255)                                                                                                                                            gCATTGCCGGCCGCTCCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGCCGGCGCAACCGTCGGTCGTCGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCaaa       <  1:239637/149‑1 (MQ=255)                                                                                                                                                  ccggccgCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgct  <  3:146706/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGACGCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCT  >  NC_002947/2057648‑2057940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.