New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057795 =	34 (0.810)	4 (0.100)	4/250	NT	11.1%	intergenic (+11/+117)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057893 =	31 (0.760)					intergenic (+109/+19)	PP_1832/PP_1833	oxidase/hypothetical protein

TGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACT  >  NC_002947/2057745‑2058037                                                                                                                                                      |                                                                                                                                                 tgtgACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCa                                                                                                                                                  <  1:82316/149‑1 (MQ=255) tgggACTGCGCGGGCATTTCTTGGTAGCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGAAGGAGCGGGTT‑CACCCGCGAAGAGGCCa                                                                                                                                                  <  1:153667/146‑1 (MQ=255)           cgGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCaa                                                                                                                                        <  2:4765/149‑1 (MQ=255)                         tATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAgg                                                                                                                                           <  3:101390/132‑1 (MQ=255)                             gacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTa                                                                                                                       <  7:149507/148‑1 (MQ=255)                               cgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGt                                                                                                                    <  7:119892/149‑1 (MQ=255)                                     gTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCCCTCCGACATTGACAGCGCGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAGGAGCCGGTT‑GACCCGCGAAGAGGCCAGTTAAGGCAATACACCCCACAGCCGTTGGGCggcaa                                                                                                              >  8:61672/1‑149 (MQ=255)                                           gCATTGCCGGCCGCTCCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGCCGGCGCAACCGTCGGTCGTCGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCaaa                                                                                                        <  1:239637/149‑1 (MQ=255)                                                 ccggccgCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgct                                                                                                   <  3:146706/148‑1 (MQ=255)                                                                     cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCCGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATc                                                                                  >  5:36743/1‑145 (MQ=255)                                                                      ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGGAGGAGCGGGTT‑CACCAGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                             >  5:149235/1‑149 (MQ=255)                                                                       ccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                             >  7:199163‑M2/80‑149 (MQ=255)                                                                         gctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGa                                                                           >  3:117795‑M2/78‑149 (MQ=255)                                                                             tACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTGCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCgg                                                                       >  1:209395/1‑149 (MQ=255)                                                                               caatcaCTGCGCGATGCCTAAGGGCGGCGCAACCGTCGCTCGTAGGAGCGGGTT‑CACCCGCGAACAGGCCACTTCAGGCAATACACCCCTCAGCGGTACGTCGGCAAGGCAAACCCCTGCTGGCTCTGCAGCATCCAGATGACCGGCa                                                                     >  4:130730/6‑148 (MQ=255)                                                                                aTTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAAc                                                                                                       >  1:36035/1‑113 (MQ=255)                                                                                aTTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAAc                                                                                                       <  2:36035/113‑1 (MQ=255)                                                                                      tGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                             >  6:40323/1‑149 (MQ=255)                                                                                       cggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                             <  8:199163‑M2/86‑1 (MQ=255)                                                                                        cgcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTTGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                             <  7:61672/147‑1 (MQ=255)                                                                                        cgcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCTAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                             <  3:130730/147‑1 (MQ=255)                                                                                        cgcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTAAGGCAATACACCACTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCCTCGAGATGACCGGCAATTCACTGGc                                                           >  8:129976/1‑149 (MQ=255)                                                                                                 tAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCGTCTTCGGc                                                  >  6:64853/1‑149 (MQ=255)                                                                                                 tAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                  >  5:126828/1‑149 (MQ=255)                                                                                                   aGGGCGGCGTTCCCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGcc                                                 <  1:92131/148‑1 (MQ=255)                                                                                                              aCCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCacgaag                                      >  8:12625/1‑146 (MQ=255)                                                                                                               ccGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                  <  7:196859/135‑1 (MQ=255)                                                                                                               ccGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                  >  8:196859/1‑135 (MQ=255)                                                                                                                  tcggtcgTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATgg                                 <  6:36743/149‑1 (MQ=255)                                                                                                                        gTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGa                           >  1:37857/1‑149 (MQ=255)                                                                                                                         tcttcgCGGGTG‑AACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGAt                          >  6:113614/6‑149 (MQ=255)                                                                                                                            gAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGc                       >  4:115792/1‑149 (MQ=255)                                                                                                                               cGGGTG‑AACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCa                    <  5:113614/149‑1 (MQ=255)                                                                                                                                 ggTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAg                   >  3:164122/1‑148 (MQ=255)                                                                                                                                  gTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa                 <  2:37857/149‑1 (MQ=255)                                                                                                                                   gttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa                 <  4:117795‑M2/130‑1 (MQ=255)                                                                                                                                       aCCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCAGCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGc             >  6:66811/1‑149 (MQ=255)                                                                                                                                                  ggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACt  <  5:40323‑M2/145‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTT‑CACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACT  >  NC_002947/2057745‑2058037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.