New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2103503 =	31 (0.730)	4 (0.100)	4/242	NT	11.4%	coding (1381/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2103536 =	33 (0.830)					coding (1348/1515 nt)	PP_1879	hypothetical protein

TTTGCATCGGGCTACGGCTTGTCTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAG  >  NC_002947/2103358‑2103650                                                                                                                                                   |                                                                                                                                                       tttGCATCGGGGTACTGCTTGTCTTCCAGTTGGGATGTAGCATCGGGAAATTTCAATCTGGTAATCTTATCGTCTAACGACACTTCAACAGACACCCGGAACTGATAGTTGATTGCCAGCCTCATCAGTTCGTTTTTCGTG‑ACGCTat                                                                                                                                                      <  2:235977/148‑2 (MQ=255) gcgcacactgggcgaaagcaccacctttaccctggaaagctggccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTAc                                                                                                                                                      <  2:141738‑M1/3‑1 (MQ=255)  ttGCATCGGGCTACGGCTTGTCTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTAcc                                                                                                                                                     >  5:105932/1‑148 (MQ=255)     cATCGGGCTACGGCTTGTCTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGc                                                                                                                                                 <  1:55362/149‑1 (MQ=255)     acactgggcgaaaggacctcctttaccgtggaaagctggccgttccggcatacgtcgcatttcgtcaaggcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgcggattgccaccgcgctgcctgTACCCAg                                                                                                                                                  >  1:260460‑M1/143‑149 (MQ=255)       actgggcgaaagcaccacctttaccctggaaagctggccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGc                                                                                                                                                 <  5:16639‑M1/8‑1 (MQ=255)              gaaagcaccacctttaccctggaaagctggccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCAc                                                                                                                                      <  3:224982‑M1/16‑1 (MQ=255)               cGGCTTGTCTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGc                                                                                                                                    <  8:95655/149‑1 (MQ=255)                       cTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCg                                                                                                                            >  8:139393/1‑149 (MQ=255)                                 ggCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                  <  7:139393/149‑1 (MQ=255)                                      agctggccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAg                                                                                                              >  4:224982‑M1/110‑149 (MQ=255)                                        gCATCGGGAAATTTCAACCAGCTCATCTTATCGTCGAACGCCACTTCAACCGCCACCCGGAACTGATACTTGATTGCCAGCATCAACCGTTGGGTTTTCGTT‑AAGCTACCCCGA‑‑A‑CCATCACGCCGGTATCGCTTGTTACAGGCAgcgc                                                                                                           >  8:199746/1‑149 (MQ=255)                                           gccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                  >  2:146735‑M1/105‑140 (MQ=255)                                           gccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                  <  1:146735‑M1/36‑1 (MQ=255)                                             gggAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTGCTCGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                       <  1:202541/149‑1 (MQ=255)                                                          gtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTAcc                                                                                                                                                     <  5:36263‑M1/4‑1 (MQ=255)                                                          gtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTAcc                                                                                                                                                     >  6:36263‑M1/90‑93 (MQ=255)                                                           agctcagctTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCt                                                                                         >  5:270273/1‑148 (MQ=255)                                                                agctTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTa                                                                                                                                                       >  3:148850/1‑84 (MQ=255)                                                                agctTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTa                                                                                                                                                       <  4:148850/84‑1 (MQ=255)                                                                      tcgtcgAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAg                                                                              <  1:46160/148‑1 (MQ=255)                                                                                   cTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                       >  6:230609/1‑110 (MQ=255)                                                                                   cTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                       <  5:230609/110‑1 (MQ=255)                                                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGCGGAGGCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGc                                                                  >  1:218757/1‑149 (MQ=255)                                                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAgcgc                                                                                                           >  8:204905/1‑105 (MQ=255)                                                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAgcgc                                                                                                           <  7:204905/105‑1 (MQ=255)                                                                                    acggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTAccc                                                                                                                                                    <  4:119779‑M1/5‑1 (MQ=255)                                                                                    acggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTAccc                                                                                                                                                    >  3:119779‑M1/64‑68 (MQ=255)                                                                                            acacCCGCAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGTTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCg                                                       <  7:199746/149‑1 (MQ=255)                                                                                                ccGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGAttt                                                                                    >  3:133263/1‑116 (MQ=255)                                                                                                ccGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGAttt                                                                                    <  4:133263/116‑1 (MQ=255)                                                                                                 cGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGAt                                                  >  7:177262/1‑149 (MQ=255)                                                                                                  ggAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATc                                                 >  4:121591/1‑149 (MQ=255)                                                                                                             ttGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGt                                                                             <  7:12768/110‑1 (MQ=255)                                                                                                             ttGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGt                                                                             >  8:12768/1‑110 (MQ=255)                                                                                                               gATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACg                                     >  1:105371/1‑148 (MQ=255)                                                                                                                    ccAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCAATCCAGGCGTTGACGAATTGc                               >  2:125461/1‑149 (MQ=255)                                                                                                                       gCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGAc                            <  2:218757/149‑1 (MQ=255)                                                                                                                         cTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACg                           >  4:191550/1‑148 (MQ=255)                                                                                                                         cTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGt                          <  8:177262/149‑1 (MQ=255)                                                                                                                             aCAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGc                      >  1:141738/1‑149 (MQ=255)                                                                                                                             aCAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCAATCCAGGCGTTGACGAATTGCGACGTATGc                      <  1:125461/149‑1 (MQ=255)                                                                                                                                    ggTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACg               <  3:121591/149‑1 (MQ=255)                                                                                                                                     gTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACgg              >  6:16639/1‑149 (MQ=255)                                                                                                                                     gTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACgg              >  1:183576/1‑149 (MQ=255)                                                                                                                                       tttCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGc             >  2:146810/1‑148 (MQ=255)                                                                                                                                                  cTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAg  <  2:183576/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       TTTGCATCGGGCTACGGCTTGTCTTCCAGTTGGGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAG  >  NC_002947/2103358‑2103650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.