New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2103503 =	31 (0.730)	4 (0.100)	4/242	NT	11.4%	coding (1381/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2103536 =	33 (0.830)					coding (1348/1515 nt)	PP_1879	hypothetical protein

GGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAGTGTGCGC  >  NC_002947/2103390‑2103681                                                                                                                                                       |                                                                                                                                                  ggCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                                                 <  7:139393/149‑1 (MQ=255)      agctggccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAg                                                                                                                                             >  4:224982‑M1/110‑149 (MQ=255)        gCATCGGGAAATTTCAACCAGCTCATCTTATCGTCGAACGCCACTTCAACCGCCACCCGGAACTGATACTTGATTGCCAGCATCAACCGTTGGGTTTTCGTT‑AAGCTACCCCGA‑‑A‑CCATCACGCCGGTATCGCTTGTTACAGGCAgcgc                                                                                                                                          >  8:199746/1‑149 (MQ=255)           gccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                                                 <  1:146735‑M1/36‑1 (MQ=255)           gccgttccggcatacgtcgcaattcgtcaacgcctggatcgacggggtggaaagcggcaacgtcactcgggaaatcaggctgccgattgccaccgcgctgcctgTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAg                                                                                                                                                 >  2:146735‑M1/105‑140 (MQ=255)             gggAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTGCTCGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                                                      <  1:202541/149‑1 (MQ=255)                           agctcagctTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCt                                                                                                                        >  5:270273/1‑148 (MQ=255)                                      tcgtcgAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAg                                                                                                             <  1:46160/148‑1 (MQ=255)                                                   cTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                                                      >  6:230609/1‑110 (MQ=255)                                                   cTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTg                                                                                                                                      <  5:230609/110‑1 (MQ=255)                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGCGGAGGCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGc                                                                                                 >  1:218757/1‑149 (MQ=255)                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAgcgc                                                                                                                                          >  8:204905/1‑105 (MQ=255)                                                    ttCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAgcgc                                                                                                                                          <  7:204905/105‑1 (MQ=255)                                                            acacCCGCAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGTTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCg                                                                                      <  7:199746/149‑1 (MQ=255)                                                                ccGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGAttt                                                                                                                   <  4:133263/116‑1 (MQ=255)                                                                ccGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGAttt                                                                                                                   >  3:133263/1‑116 (MQ=255)                                                                 cGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGAt                                                                                 >  7:177262/1‑149 (MQ=255)                                                                  ggAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATc                                                                                >  4:121591/1‑149 (MQ=255)                                                                             ttGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGt                                                                                                            <  7:12768/110‑1 (MQ=255)                                                                             ttGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGt                                                                                                            >  8:12768/1‑110 (MQ=255)                                                                               gATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACg                                                                    >  1:105371/1‑148 (MQ=255)                                                                                    ccAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCAATCCAGGCGTTGACGAATTGc                                                              >  2:125461/1‑149 (MQ=255)                                                                                       gCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGAc                                                           <  2:218757/149‑1 (MQ=255)                                                                                         cTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACg                                                          >  4:191550/1‑148 (MQ=255)                                                                                         cTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGt                                                         <  8:177262/149‑1 (MQ=255)                                                                                             aCAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGc                                                     >  1:141738/1‑149 (MQ=255)                                                                                             aCAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCAATCCAGGCGTTGACGAATTGCGACGTATGc                                                     <  1:125461/149‑1 (MQ=255)                                                                                                    ggTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACg                                              <  3:121591/149‑1 (MQ=255)                                                                                                     gTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACgg                                             >  6:16639/1‑149 (MQ=255)                                                                                                     gTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACgg                                             >  1:183576/1‑149 (MQ=255)                                                                                                       tttCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGc                                            >  2:146810/1‑148 (MQ=255)                                                                                                               ctgcctgtacccagcgaaacgggcgtgatggtgctgggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCt                                       >  4:224982‑M2/41‑149 (MQ=255)                                                                                                                  cTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAg                                 <  2:183576/149‑1 (MQ=255)                                                                                                                   ctgtacccagcgaaacgggcgtgatggtgctgggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGc                                            <  1:146735‑M2/104‑1 (MQ=255)                                                                                                                   ctgtacccagcgaaacgggcgtgatggtgctgggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGc                                            >  2:146735‑M2/37‑140 (MQ=255)                                                                                                                                cATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAggtgg                      <  1:122617/149‑1 (MQ=255)                                                                                                                                 aTCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGTCAATCGGCAGCCTGATTTCCCGAGTGACGTTTCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCTGAACGGCCAGCTTTCCAGGGTAAAggtggt                     <  6:270273/149‑1 (MQ=255)                                                                                                                                      gCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCttt                >  5:151041/1‑149 (MQ=255)                                                                                                                                       gtgatggtgctgggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTc               <  3:224982‑M2/133‑1 (MQ=255)                                                                                                                                        ccGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCg              >  6:126030/1‑149 (MQ=255)                                                                                                                                        ccGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGATTTCCACCCCGTCGATCCAGGCCtt                                                                        >  4:234234/1‑91 (MQ=255)                                                                                                                                           tttCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAggtgg                      <  1:222943/138‑1 (MQ=255)                                                                                                                                           tttCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAggtgg                      >  2:222943/1‑138 (MQ=255)                                                                                                                                               gctgggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAgt        <  5:16639‑M2/140‑1 (MQ=255)                                                                                                                                                ctgggtaCAGGCAGCGCGGTGGCAATCCGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCCTTGACGAAATGCGACGTATGCCGGAACGGCCAGCTTTCCACGGTAAAGGAGGTCCTTTCGCCCAgtgt      >  1:260460‑M2/8‑149 (MQ=255)                                                                                                                                                  gggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGt                                                                                     <  4:119779‑M2/63‑1 (MQ=255)                                                                                                                                                  gggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGt                                                                                     >  3:119779‑M2/6‑68 (MQ=255)                                                                                                                                                   ggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGAc                                                           <  5:36263‑M2/89‑1 (MQ=255)                                                                                                                                                   ggtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGAc                                                           >  6:36263‑M2/5‑93 (MQ=255)                                                                                                                                                    gtaCAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAGTGTgcgc  <  2:141738‑M2/146‑1 (MQ=255)                                                                                                                                                       cAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAGTGTgcgc  >  7:16633/1‑146 (MQ=255)                                                                                                                                                       cAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAGTGTgcgc  <  8:16633/146‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                  GGCTGCCGCATCGGGAAATTTCAACCAGCTCAGCTTATCGTCGAACGACACTTCAACCGACACCCGGAACTGATAGTTGATTGCCAGCCTCAACAGTTCGGTTTTCGTG‑ACGCTACCCAGC‑‑A‑CCATCACGCCCGTTTCGCTGGGTACAGGCAGCGCGGTGGCAATCGGCAGCCTGATTTCCCGAGTGACGTTGCCGCTTTCCACCCCGTCGATCCAGGCGTTGACGAATTGCGACGTATGCCGGAACGGCCAGCTTTCCAGGGTAAAGGTGGTGCTTTCGCCCAGTGTGCGC  >  NC_002947/2103390‑2103681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.