New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2104095 =	42 (0.990)	3 (0.070)	3/246	NT	7.5%	coding (789/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2104134 =	34 (0.840)					coding (750/1515 nt)	PP_1879	hypothetical protein

GATGTCGGCATCGTCGGGTATGACGAATGTGACGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGT  >  NC_002947/2103948‑2104236                                                                                                                                                    |                                                                                                                                               gaaatggtcgacatgatgacactgacccaggagcacatcgaaacactgggcccgctaggcaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGa                                                                                                                                               <  1:261028‑M1/2‑1 (MQ=255) gaaatggtcgacatgatgacactgacccaggagcacatcgaaacactgggcccgctaggcaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGa                                                                                                                                               >  3:112899‑M1/148‑149 (MQ=255)     tCGGCATCGTCGGGTATGACGAATGTGACGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGc                                                                                                                                           >  7:240137/1‑149 (MQ=255)             gtcgGGTATGACGAATGTGACGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCa                                                                                                                                    <  8:240137/148‑1 (MQ=255)                  gTATGACGAATGTGACGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑gg                                                                                                                             <  3:257672/149‑1 (MQ=255)                                 cGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCtgtgt                                                                                                                     >  1:99008/1‑142 (MQ=255)                                 cGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCtgtgt                                                                                                                     <  2:99008/142‑1 (MQ=255)                                   ccGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGcgcg                                                                                                            <  4:98950/149‑1 (MQ=255)                                        gaaacactgggcccgctagacaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCt                                                                                                       <  5:200916‑M1/41‑1 (MQ=255)                                        gaaacactgggcccgctagacaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCt                                                                                                       >  6:200916‑M1/109‑149 (MQ=255)                                         aaTGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTg                                                                                                      >  2:74328/1‑149 (MQ=255)                                           acactgggcccgctaggcaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCa                                                                                                    >  4:213613‑M1/106‑149 (MQ=255)                                                   cAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATaa                                                                                            >  5:276387/1‑149 (MQ=255)                                                   cAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATaa                                                                                            >  3:40300/1‑149 (MQ=255)                                                      gTTCCAGCGTGCTTTGGTAATCGATGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACg                                                                                          >  4:166249/1‑148 (MQ=255)                                                           aGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGt                                                                                     >  1:169464/1‑148 (MQ=255)                                                            gCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTaa                                                                                   >  6:123244/1‑149 (MQ=255)                                                                  tttGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTg                                                                             >  8:112145/1‑149 (MQ=255)                                                                   ttGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGc                                                                            >  3:78779/1‑149 (MQ=255)                                                                         aTCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTAGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTg                                                                       <  1:74328/149‑1 (MQ=255)                                                                             cTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCa                                                                                                                 >  6:107464/1‑102 (MQ=255)                                                                             cTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCa                                                                                                                 <  5:107464/102‑1 (MQ=255)                                                                             cTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGGCGGACTCCAACGCGACCGCTAGCGCACGc                                                                                                                                 <  3:227815/87‑1 (MQ=255)                                                                               gCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACt                                                                >  2:118613/1‑149 (MQ=255)                                                                                cccTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACGGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGAc                                                                 <  2:169464/147‑1 (MQ=255)                                                                                   ttCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGc                                                             >  8:108997/1‑148 (MQ=255)                                                                                        ctcctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGa                                                       <  3:166249/149‑1 (MQ=255)                                                                                           ctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGaaa                                                     <  5:123244/148‑1 (MQ=255)                                                                                           ctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGaaa                                                     <  7:71683/148‑1 (MQ=255)                                                                                              gATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgc                                                   <  4:40300/147‑1 (MQ=255)                                                                                              gATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgc                                                   <  6:276387/147‑1 (MQ=255)                                                                                              gATGCGTGGCGATGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgcgc                                                 >  5:103073/1‑149 (MQ=255)                                                                                                            gCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGc                                   >  7:157127/1‑149 (MQ=255)                                                                                                             cAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCt                                  >  7:28512/1‑149 (MQ=255)                                                                                                              aaTTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTc                                 <  8:157127/149‑1 (MQ=255)                                                                                                                  cgcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAg                              <  7:112145/148‑1 (MQ=255)                                                                                                                   gcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCg                            <  4:78779/149‑1 (MQ=255)                                                                                                                   gcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCg                            >  3:129362/1‑149 (MQ=255)                                                                                                                     gtggtgCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGt                          <  1:118613/149‑1 (MQ=255)                                                                                                                             aGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGt                  <  8:28512/149‑1 (MQ=255)                                                                                                                                   aGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAg            <  4:129362/149‑1 (MQ=255)                                                                                                                                      tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGt                                       >  2:14974/1‑119 (MQ=255)                                                                                                                                      tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGt                                       <  1:14974/119‑1 (MQ=255)                                                                                                                                      tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCgg         <  6:103073/149‑1 (MQ=255)                                                                                                                                        ggACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGc       >  3:37271/1‑149 (MQ=255)                                                                                                                                             ccAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAgt  >  3:217638/1‑149 (MQ=255)                                                                                                                                              cAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAgt  <  7:108997/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               GATGTCGGCATCGTCGGGTATGACGAATGTGACGCCGTCGAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGT  >  NC_002947/2103948‑2104236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.