New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2104095 =	42 (0.990)	3 (0.070)	3/246	NT	7.5%	coding (789/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2104134 =	34 (0.840)					coding (750/1515 nt)	PP_1879	hypothetical protein

GAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCT  >  NC_002947/2103987‑2104282                                                                                                                                                     |                                                                                                                                                     gaaacactgggcccgctagacaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCt                                                                                                                                                     <  5:200916‑M1/41‑1 (MQ=255) gaaacactgggcccgctagacaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCt                                                                                                                                                     >  6:200916‑M1/109‑149 (MQ=255)  aaTGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTg                                                                                                                                                    >  2:74328/1‑149 (MQ=255)    acactgggcccgctaggcaccagcaaaccgctcgagctgaccttcccgggcgctttcattcgccagtccggcaacggcacgcgttacgtgcgttatgaagtgcagGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCa                                                                                                                                                  >  4:213613‑M1/106‑149 (MQ=255)            cAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATaa                                                                                                                                          >  3:40300/1‑149 (MQ=255)            cAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATaa                                                                                                                                          >  5:276387/1‑149 (MQ=255)               gTTCCAGCGTGCTTTGGTAATCGATGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACg                                                                                                                                        >  4:166249/1‑148 (MQ=255)                    aGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGt                                                                                                                                   >  1:169464/1‑148 (MQ=255)                     gCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTaa                                                                                                                                 >  6:123244/1‑149 (MQ=255)                           tttGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTg                                                                                                                           >  8:112145/1‑149 (MQ=255)                            ttGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGc                                                                                                                          >  3:78779/1‑149 (MQ=255)                                  aTCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTAGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTg                                                                                                                     <  1:74328/149‑1 (MQ=255)                                        gCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACt                                                                                                              >  2:118613/1‑149 (MQ=255)                                         cccTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACGGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGAc                                                                                                               <  2:169464/147‑1 (MQ=255)                                            ttCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGc                                                                                                           >  8:108997/1‑148 (MQ=255)                                                 ctcctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGa                                                                                                     <  3:166249/149‑1 (MQ=255)                                                    ctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGaaa                                                                                                   <  7:71683/148‑1 (MQ=255)                                                    ctTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGaaa                                                                                                   <  5:123244/148‑1 (MQ=255)                                                       gATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgc                                                                                                 <  4:40300/147‑1 (MQ=255)                                                       gATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgc                                                                                                 <  6:276387/147‑1 (MQ=255)                                                       gATGCGTGGCGATGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAgcgc                                                                                               >  5:103073/1‑149 (MQ=255)                                                                     gCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGc                                                                                 >  7:157127/1‑149 (MQ=255)                                                                      cAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCt                                                                                >  7:28512/1‑149 (MQ=255)                                                                       aaTTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTc                                                                               <  8:157127/149‑1 (MQ=255)                                                                           cgcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAg                                                                            <  7:112145/148‑1 (MQ=255)                                                                            gcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCg                                                                          <  4:78779/149‑1 (MQ=255)                                                                            gcgTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCg                                                                          >  3:129362/1‑149 (MQ=255)                                                                              gtggtgCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGt                                                                        <  1:118613/149‑1 (MQ=255)                                                                                      aGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGt                                                                <  8:28512/149‑1 (MQ=255)                                                                                            aGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAg                                                          <  4:129362/149‑1 (MQ=255)                                                                                               tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGt                                                                                     <  1:14974/119‑1 (MQ=255)                                                                                               tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGt                                                                                     >  2:14974/1‑119 (MQ=255)                                                                                               tCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCgg                                                       <  6:103073/149‑1 (MQ=255)                                                                                                 ggACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGc                                                     >  3:37271/1‑149 (MQ=255)                                                                                                      ccAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAgt                                                >  3:217638/1‑149 (MQ=255)                                                                                                       cAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAgt                                                <  7:108997/148‑1 (MQ=255)                                                                                                         tgcaggaccgcgctggcacacagccccagcgtgcgctagcggtcCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAgtgt                                              >  4:213613‑M2/45‑149 (MQ=255)                                                                                                            aggaccgcgctggcacacagccccagcgtgcgctagcggtcCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGTCTAGCGGGCCCAGTGTTTc                                           <  5:200916‑M2/108‑1 (MQ=255)                                                                                                            aggaccgcgctggcacacagccccagcgtgcgctagcggtcCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGTCTAGCGGGCCCAGTGTTTc                                           >  6:200916‑M2/42‑149 (MQ=255)                                                                                                                      cgcACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCt                                <  4:37271/149‑1 (MQ=255)                                                                                                                           gCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGt                            >  2:261028/1‑148 (MQ=255)                                                                                                                                          ccAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTc             >  7:206489/1‑149 (MQ=255)                                                                                                                                                   tcCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTc    >  3:112899‑M2/3‑149 (MQ=255)                                                                                                                                                   tcCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTc    <  1:261028‑M2/147‑1 (MQ=255)                                                                                                                                                     cTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGCGCGCTTTGCTGCTGCCTAGCGGGCCCAGTGTTTCTATGTGCTCCTGGGTCAGTGTCATCATGACGACCATTTCCt  >  2:93334/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAATGCGTTGCCAGGTTCCAGCGTGCTTTGGTAATCGCTGCCCTTCGCCTCCTTGATGCGTGGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCT‑GGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCT  >  NC_002947/2103987‑2104282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.