New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2242860	37 (0.880)	3 (0.070)	3/248	NT	7.9%	coding (433/540 nt)	PP_1978	TetR family transcriptional regulator
	?	NC_002947	= 2242892	34 (0.840)					coding (465/540 nt)	PP_1978	TetR family transcriptional regulator

TGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGC  >  NC_002947/2242719‑2243006                                                                                                                                              |                                                                                                                                                   tGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTgg                                                                                                                                                 <  4:250360/145‑1 (MQ=255) tGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTgg                                                                                                                                                 >  3:250360/1‑145 (MQ=255) tGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGa                                                                                                                                             >  4:181968/1‑149 (MQ=255)    gAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCt                                                                                                                                          <  8:20123/149‑1 (MQ=255)     aaGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTg                                                                                                                                         >  5:232425/1‑149 (MQ=255)       gTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGCCCTGGc                                                                                                                                       >  5:162941/1‑149 (MQ=255)            tGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGGGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGa                                                                                                                                  >  5:275178/1‑149 (MQ=255)              cTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATg                                                                                                                                <  2:33238/149‑1 (MQ=255)               ttGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATgg                                                                                                                               >  5:150184/1‑149 (MQ=255)               ttGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATgg                                                                                                                               >  2:231995/1‑149 (MQ=255)                  cccGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGtt                                                                                                                             <  6:275178/148‑1 (MQ=255)                     gCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTgggg                                                                                                                         >  7:33764/1‑149 (MQ=255)                             aCGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcg                                                                                                                 <  5:46842‑M2/149‑4 (MQ=255)                                    gggCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCcagccccccaaccatcagggccaggtcggccagcgctttgt                                                                                                           <  3:245808‑M1/148‑42 (MQ=255)                                       cGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGAAGGTTGGGGGGCTGGCGCTGGccc                                                                                                          >  3:225516/1‑146 (MQ=255)                                       cGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGAAGGTTGGGGGGCTGGCGCTGGccc                                                                                                          <  4:225516/146‑1 (MQ=255)                                              cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                <  6:232425/149‑1 (MQ=255)                                              cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                <  1:231995/149‑1 (MQ=255)                                              cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                <  4:60909/149‑1 (MQ=255)                                                  gcgtGCCGGAGTTCTTCCGCTAGTTGCTTGCCGAGTACATGGAGTTGATGACTGCCGCGATTGTCGACCGGCGTGTTGATTCCGACTAAGCGCTGGCCGACCTGGCCCTGTTGGTTGGGGGGCTGGCGCTGGCCGGGGCCTTGGGGAc                                                                                             <  8:160828/145‑1 (MQ=255)                                                   ccTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCa                                                                                           <  8:33764/149‑1 (MQ=255)                                                        cGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGAc                                                                                      <  1:172305/149‑1 (MQ=255)                                                        cGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCATGGGGACCAGTGAc                                                                                      >  3:240556/1‑149 (MQ=255)                                                          gAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTg                                                                                                                                                  >  4:211451/1‑87 (MQ=255)                                                          gAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTg                                                                                                                                                  <  3:211451/87‑1 (MQ=255)                                                          gAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCt                                                                                    >  4:93977/1‑149 (MQ=255)                                                                     cgAGGTGCTGGCCGAGCACATCGAGTTGATGACTGGCGCGATGGTCGACCGCCCTGAGGATGCCGACATAGCGCTGGCCGACCTGGCCCTGATGGTTTGGGTGCTGGCGCTGGCCCg                                                                                                         <  7:137564/117‑1 (MQ=255)                                                                     cgAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGAAAAAGCGCTGGCCGACCTGGCCCTGATGGATGGTGCGCTGGCGCTGGCCCg                                                                                                         >  8:137564/1‑117 (MQ=255)                                                                      gAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCcagccccccaaccatcagggccaggtcggccagcgctttgtc                                                                                                          <  3:249700‑M1/115‑43 (MQ=255)                                                                      gAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCcagccccccaaccatcagggccaggtcggccagcgctttgtc                                                                                                          >  4:249700‑M1/1‑73 (MQ=255)                                                                                    gCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGgctggcgctgg                                                                                                             >  4:57424/1‑98 (MQ=255)                                                                                       caTCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAAt                                                       <  3:181968/149‑1 (MQ=255)                                                                                        aTCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCaaag                                                       >  1:95493/1‑147 (MQ=255)                                                                                                tatgaCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTg                                               <  6:46842/147‑1 (MQ=255)                                                                                                   gaCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCtt                                            >  5:35138/1‑148 (MQ=255)                                                                                                    aCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCttt                                           <  6:35138/148‑1 (MQ=255)                                                                                                            gATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTg                                    >  1:263233/1‑147 (MQ=255)                                                                                                            gATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGa                                  <  6:150184/149‑1 (MQ=255)                                                                                                                   gACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGc                           <  3:93977/149‑1 (MQ=255)                                                                                                                    aCCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGc                           >  2:44555/1‑148 (MQ=255)                                                                                                                     ccGCCCTGAGGATGCCGACAAAGCGCTGGCCGAGCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGa                         <  3:59439/149‑1 (MQ=255)                                                                                                                                   ccGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAg            <  4:240556/148‑1 (MQ=255)                                                                                                                                    cGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTggg                                                                                                                          <  1:218263/37‑1 (MQ=255)                                                                                                                                    cGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTggg                                                                                                                          >  2:218263/1‑37 (MQ=255)                                                                                                                                    cGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCt          >  7:42705/1‑149 (MQ=255)                                                                                                                                     gACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctc                                           >  4:249700‑M2/1‑42 (MQ=255)                                                                                                                                     gACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctc                                           <  3:249700‑M2/115‑74 (MQ=255)                                                                                                                                      aCAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctcgcggaagacctccggcaggcgctgcatttcgccc         <  3:245808‑M2/148‑108 (MQ=255)                                                                                                                                            cgccagccccccaaccatcagggccaggtcggccagcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctcgcggaagacctccggcaggcgctgcatttcgcccaacgcgt  <  5:46842‑M1/149‑147 (MQ=255)                                                                                                                                            cgcTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTcgc  >  4:81538/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   TGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGC  >  NC_002947/2242719‑2243006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.