New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2242860	37 (0.880)	3 (0.070)	3/248	NT	7.9%	coding (433/540 nt)	PP_1978	TetR family transcriptional regulator
	?	NC_002947	= 2242892	34 (0.840)					coding (465/540 nt)	PP_1978	TetR family transcriptional regulator

ACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCACCTTGGGCCGCCTG  >  NC_002947/2242747‑2243033                                                                                                                                                  |                                                                                                                                              aCGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcg                                                                                                                                            <  5:46842‑M2/149‑4 (MQ=255)           cGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGAAGGTTGGGGGGCTGGCGCTGGccc                                                                                                                                     <  4:225516/146‑1 (MQ=255)           cGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGAAGGTTGGGGGGCTGGCGCTGGccc                                                                                                                                     >  3:225516/1‑146 (MQ=255)                  cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                                           <  1:231995/149‑1 (MQ=255)                  cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                                           <  6:232425/149‑1 (MQ=255)                  cAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTggg                                                                                                                           <  4:60909/149‑1 (MQ=255)                      gcgtGCCGGAGTTCTTCCGCTAGTTGCTTGCCGAGTACATGGAGTTGATGACTGCCGCGATTGTCGACCGGCGTGTTGATTCCGACTAAGCGCTGGCCGACCTGGCCCTGTTGGTTGGGGGGCTGGCGCTGGCCGGGGCCTTGGGGAc                                                                                                                        <  8:160828/145‑1 (MQ=255)                       ccTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCa                                                                                                                      <  8:33764/149‑1 (MQ=255)                            cGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGAc                                                                                                                 <  1:172305/149‑1 (MQ=255)                            cGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCATGGGGACCAGTGAc                                                                                                                 >  3:240556/1‑149 (MQ=255)                              gAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCt                                                                                                               >  4:93977/1‑149 (MQ=255)                                         cgAGGTGCTGGCCGAGCACATCGAGTTGATGACTGGCGCGATGGTCGACCGCCCTGAGGATGCCGACATAGCGCTGGCCGACCTGGCCCTGATGGTTTGGGTGCTGGCGCTGGCCCg                                                                                                                                    <  7:137564/117‑1 (MQ=255)                                         cgAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGAAAAAGCGCTGGCCGACCTGGCCCTGATGGATGGTGCGCTGGCGCTGGCCCg                                                                                                                                    >  8:137564/1‑117 (MQ=255)                                                        gCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGgctggcgctgg                                                                                                                                        >  4:57424/1‑98 (MQ=255)                                                           caTCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAAt                                                                                  <  3:181968/149‑1 (MQ=255)                                                            aTCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCaaag                                                                                  >  1:95493/1‑147 (MQ=255)                                                                    tatgaCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTg                                                                          <  6:46842/147‑1 (MQ=255)                                                                       gaCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCtt                                                                       >  5:35138/1‑148 (MQ=255)                                                                        aCTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCttt                                                                      <  6:35138/148‑1 (MQ=255)                                                                                gATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTg                                                               >  1:263233/1‑147 (MQ=255)                                                                                gATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGa                                                             <  6:150184/149‑1 (MQ=255)                                                                                       gACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGc                                                      <  3:93977/149‑1 (MQ=255)                                                                                        aCCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGc                                                      >  2:44555/1‑148 (MQ=255)                                                                                         ccGCCCTGAGGATGCCGACAAAGCGCTGGCCGAGCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGa                                                    <  3:59439/149‑1 (MQ=255)                                                                                                       ccGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAg                                       <  4:240556/148‑1 (MQ=255)                                                                                                        cGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCt                                     >  7:42705/1‑149 (MQ=255)                                                                                                         gACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctc                                                                      >  4:249700‑M2/1‑42 (MQ=255)                                                                                                         gACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctc                                                                      <  3:249700‑M2/115‑74 (MQ=255)                                                                                                          aCAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGgcgctttgtcggcatcctcagggcggtcgaccatcgcggcagtcatcaactcgatgtgctcggccagcacctcgcggaagacctccggcaggcgctgcatttcgccc                                    <  3:245808‑M2/148‑108 (MQ=255)                                                                                                                cgcTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTcgc                             >  4:81538/1‑149 (MQ=255)                                                                                                                     gCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGgtgt                        <  2:95493/149‑1 (MQ=255)                                                                                                                          ccTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATg                   >  5:75580/1‑149 (MQ=255)                                                                                                                              gCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCAc               >  2:14273/1‑149 (MQ=255)                                                                                                                              gCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGAACAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCAc               >  1:99831/1‑149 (MQ=255)                                                                                                                                ccTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTACCCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCACCt             >  7:97936/1‑149 (MQ=255)                                                                                                                                ccTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCACCt             >  5:176076/1‑149 (MQ=255)                                                                                                                                ccTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCCGTGTCAATGGCACCt             >  7:78357/1‑149 (MQ=255)                                                                                                                                 cTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGCCATTGACAccgc            <  3:81538/149‑3 (MQ=255)                                                                                                                                  tGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTg                                                                          >  2:271099/1‑86 (MQ=255)                                                                                                                                  tGATGGGTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTg                                                                          <  1:271099/86‑1 (MQ=255)                                                                                                                                           gggggCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCACCTTGGGCCGCCTg  <  1:44555/149‑1 (MQ=255)                                                                                                                                               gctggcgctggcCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTc                               >  6:163346/1‑116 (MQ=255)                                                                                                                                               gctggcgctggcCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTc                               <  5:163346/116‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              ACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCTGGCCGACCTGGCCCTGATGGTTGGGGGGCTGGCGCTGGCCCGGGCCTTGGGGACCAGTGACCTGTCTGACCGTATTCTGCGCGCCGCCAAATCGGCGGTGCTTTAACCCTGGAGCATGGCGATGACTACCCTGAGCTGGATTCGCGGTGTCAATGGCACCTTGGGCCGCCTG  >  NC_002947/2242747‑2243033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.