New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2320096	41 (0.970)	4 (0.100)	4/250	NT	8.6%	coding (1109/1296 nt)	PP_2040	MFS transporter
	?	NC_002947	= 2320133	45 (1.100)					coding (1146/1296 nt)	PP_2040	MFS transporter

TCGTCAGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAAC  >  NC_002947/2319952‑2320242                                                                                                                                                 |                                                                                                                                                    tCGTCAGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCg                                                                                                                                                 <  7:131323/149‑1 (MQ=255)  cGTCAGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCgg                                                                                                                                                >  7:83627/1‑149 (MQ=255)    tCAGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCggtg                                                                                                                                              >  3:150763/1‑149 (MQ=255)      aGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCAGTCATCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCcccggcgcc                                                                                                                                            >  7:170815‑M1/1‑140 (MQ=255)         cTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCAc                                                                                                                                         <  3:81754/149‑1 (MQ=255)          tCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCggtg                                                                                                                                              <  7:248144/143‑1 (MQ=255)          tCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCggtg                                                                                                                                              >  8:248144/1‑143 (MQ=255)               tgcAGGGGTGGGCTGGCGCTGGTGTTGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTGTGGCGATCGGCAACGGTACCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGttt                                                                                                                                   <  7:220408/147‑1 (MQ=255)                  aGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGc                                                                                                                                 <  6:4183/148‑1 (MQ=255)                         ggCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAg                                                                                                                         <  4:164720/149‑1 (MQ=255)                                gcTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCcccggcgccctgcaccagcaaaccggtgaccaccg                                                                                                                  >  5:144752‑M1/1‑114 (MQ=255)                                    gTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCcccggcgccctgcaccagcaaaccggtgaccaccggtgc                                                                                                              <  6:144752‑M1/149‑40 (MQ=255)                                       aTGTACTCCGTTGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCcccggcgccctgcaccagcaaaccggtgaccaccggtgccga                                                                                                           <  8:170815‑M1/149‑43 (MQ=255)                                           aCTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCgccgg                                                                                                                 <  2:46982/139‑1 (MQ=255)                                           aCTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCgccgg                                                                                                                 >  1:46982/1‑139 (MQ=255)                                            cTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGcac‑a                                                                                                     >  3:98849/1‑149 (MQ=255)                                               cGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCac‑ac                                                                                                    <  8:83627/147‑1 (MQ=255)                                                        tGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTg                                                                                         >  7:130564/1‑149 (MQ=255)                                                         gCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTgg                                                                                        >  4:221009/1‑149 (MQ=255)                                                           cATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGc                                                                                       >  5:251996/1‑148 (MQ=255)                                                               cTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAgg                                                                                   <  8:130564/148‑1 (MQ=255)                                                               cTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAgg                                                                                   <  1:50042/148‑1 (MQ=255)                                                                 ggCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGtt                                                                                >  7:35325/1‑149 (MQ=255)                                                                    ggAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTc                                                                             <  4:148291/149‑1 (MQ=255)                                                                       gTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTgg                                                                          >  8:202833/1‑149 (MQ=255)                                                                           aCGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGtgtg                                                                      <  3:221009/149‑1 (MQ=255)                                                                                      gCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTg                                                                           >  6:137550/1‑133 (MQ=255)                                                                                        aGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTg                                                         <  6:251996/149‑1 (MQ=255)                                                                                        aGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTg                                                         <  8:137450/149‑1 (MQ=255)                                                                                         gcgcGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                        >  5:96705/1‑149 (MQ=255)                                                                                           gcggcgGCATTCTGGCGATCGACAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                        >  6:133252/1‑147 (MQ=255)                                                                                           gcggcgGCATTCTGGCGATCGACAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                        <  5:133252/147‑1 (MQ=255)                                                                                            cggcggCATTCTGGCGATCGGCAACGGTATCGGCTCGTTGGCCGGGCTGTCGGCACCGGTGGTGACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGa                                                     <  4:150763/149‑1 (MQ=255)                                                                                               cggcATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTg                                                  <  8:35325/149‑1 (MQ=255)                                                                                               cggcATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTg                                                  >  2:34041/1‑149 (MQ=255)                                                                                                    ttCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCACGACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCgg                                              <  1:208999/149‑1 (MQ=255)                                                                                                    ttCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCggg                                             <  1:34041/149‑1 (MQ=255)                                                                                                                  aaCGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGGTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGc                               <  5:127706/149‑1 (MQ=255)                                                                                                                            ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                     >  7:23721/1‑149 (MQ=255)                                                                                                                            ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                     >  7:190151/1‑149 (MQ=255)                                                                                                                            ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGAGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                     >  1:212926/1‑149 (MQ=255)                                                                                                                                   ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                 <  5:248429/130‑1 (MQ=255)                                                                                                                                   ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                 <  5:252393/130‑1 (MQ=255)                                                                                                                                   ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                 >  6:252393/1‑130 (MQ=255)                                                                                                                                   ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                 >  6:248429/1‑130 (MQ=255)                                                                                                                                        ggCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAAcc         >  7:72540/1‑149 (MQ=255)                                                                                                                                          cTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCg       <  8:23721/149‑1 (MQ=255)                                                                                                                                             tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgctgcccgctgggcgtgaactccgccagcatggcaggcccaacggagtacat     <  8:170815‑M2/149‑108 (MQ=255)                                                                                                                                             tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCg                  <  2:204296/135‑1 (MQ=255)                                                                                                                                             tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCg                  >  1:204296/1‑135 (MQ=255)                                                                                                                                                gCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgctgcccgctgggcgtgaactccgccagcatggcaggccccacggagtacatcac  <  6:144752‑M2/149‑111 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TCGTCAGCCTCACGTTCAGCGGTGGGCTGGCGCTGGTGATGTACTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAAC  >  NC_002947/2319952‑2320242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.