New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2320096	41 (0.970)	4 (0.100)	4/250	NT	8.6%	coding (1109/1296 nt)	PP_2040	MFS transporter
	?	NC_002947	= 2320133	45 (1.100)					coding (1146/1296 nt)	PP_2040	MFS transporter

CTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGCTGCGCCTG  >  NC_002947/2319995‑2320272                                                                                                                                           |                                                                                                                                             cTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGcac‑a                                                                                                                                   >  3:98849/1‑149 (MQ=255)    cGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCac‑ac                                                                                                                                  <  8:83627/147‑1 (MQ=255)             tGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTg                                                                                                                       >  7:130564/1‑149 (MQ=255)              gCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTgg                                                                                                                      >  4:221009/1‑149 (MQ=255)                cATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGc                                                                                                                     >  5:251996/1‑148 (MQ=255)                    cTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAgg                                                                                                                 <  1:50042/148‑1 (MQ=255)                    cTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAgg                                                                                                                 <  8:130564/148‑1 (MQ=255)                      ggCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGtt                                                                                                              >  7:35325/1‑149 (MQ=255)                         ggAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTc                                                                                                           <  4:148291/149‑1 (MQ=255)                            gTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTgg                                                                                                        >  8:202833/1‑149 (MQ=255)                                aCGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGtgtg                                                                                                    <  3:221009/149‑1 (MQ=255)                                           gCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTg                                                                                                         >  6:137550/1‑133 (MQ=255)                                             aGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTg                                                                                       <  8:137450/149‑1 (MQ=255)                                             aGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTg                                                                                       <  6:251996/149‑1 (MQ=255)                                              gcgcGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                                                      >  5:96705/1‑149 (MQ=255)                                                gcggcgGCATTCTGGCGATCGACAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                                                      <  5:133252/147‑1 (MQ=255)                                                gcggcgGCATTCTGGCGATCGACAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTgg                                                                                      >  6:133252/1‑147 (MQ=255)                                                 cggcggCATTCTGGCGATCGGCAACGGTATCGGCTCGTTGGCCGGGCTGTCGGCACCGGTGGTGACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGa                                                                                   <  4:150763/149‑1 (MQ=255)                                                    cggcATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTg                                                                                >  2:34041/1‑149 (MQ=255)                                                    cggcATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTg                                                                                <  8:35325/149‑1 (MQ=255)                                                         ttCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCACGACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCgg                                                                            <  1:208999/149‑1 (MQ=255)                                                         ttCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCggg                                                                           <  1:34041/149‑1 (MQ=255)                                                                       aaCGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGGTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGc                                                             <  5:127706/149‑1 (MQ=255)                                                                                 ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                                                   >  7:23721/1‑149 (MQ=255)                                                                                 ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                                                   >  7:190151/1‑149 (MQ=255)                                                                                 ccTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGAGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGAc                                                   >  1:212926/1‑149 (MQ=255)                                                                                        ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                                               <  5:252393/130‑1 (MQ=255)                                                                                        ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                                               >  6:248429/1‑130 (MQ=255)                                                                                        ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                                               >  6:252393/1‑130 (MQ=255)                                                                                        ggCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTg                                                               <  5:248429/130‑1 (MQ=255)                                                                                             ggCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAAcc                                       >  7:72540/1‑149 (MQ=255)                                                                                               cTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCg                                     <  8:23721/149‑1 (MQ=255)                                                                                                  tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgctgcccgctgggcgtgaactccgccagcatggcaggcccaacggagtacat                                   <  8:170815‑M2/149‑108 (MQ=255)                                                                                                  tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCg                                                <  2:204296/135‑1 (MQ=255)                                                                                                  tCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCg                                                >  1:204296/1‑135 (MQ=255)                                                                                                     gCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgctgcccgctgggcgtgaactccgccagcatggcaggccccacggagtacatcac                                <  6:144752‑M2/149‑111 (MQ=255)                                                                                                         cGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgctgcccgctgggcgtgaactccgccagcatggcaggccccacggagtacatcaccagc                            >  5:144752‑M2/1‑35 (MQ=255)                                                                                                         cGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTg                           <  6:96705/149‑1 (MQ=255)                                                                                                          ggtggtCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTgg                          <  7:202833/149‑1 (MQ=255)                                                                                                                   cGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTgg                 <  4:98849/149‑1 (MQ=255)                                                                                                                    ggTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTggg                <  2:212926/149‑1 (MQ=255)                                                                                                                          cTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGc          >  6:87258/1‑149 (MQ=255)                                                                                                                           tGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGCt         >  7:11312/1‑149 (MQ=255)                                                                                                                               gCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGCAAACCCGGAAACGTCTGGTGCAGGTGGGCACGGCTgcgc     >  6:3019/1‑149 (MQ=255)                                                                                                                                gcgatctccggggccgggCTC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGTTTGCCGGGCTGATCTGGCTGGCCTGGATGGACCCGCAGAAAAGCCGGCAACGTGTGGTGCAGGTGGGCACGGCTgcgc     <  6:182887/141‑1 (MQ=255)                                                                                                                                   ggCGCCGGGgccgacagcccggccaacgaggcgataccgttgccgatcgccagaatgccgccgcgatgactgctgggcgtgaactccgccagcatggcaggccccacggagtacatcaccagcgccagcccaccgctgaacgtgaggct  >  7:170815‑M2/1‑9 (MQ=255)                                                                                                                                   ggCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCg                                     <  7:96458/113‑1 (MQ=255)                                                                                                                                   ggCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCg                                     >  8:96458/1‑113 (MQ=255)                                                                                                                                   ggCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGCTgc       <  1:222316/143‑1 (MQ=255)                                                                                                                                   ggCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGCTgc       >  2:222316/1‑143 (MQ=255)                                                                                                                                        cggggccgggCAC‑ACGGCAGGGTTTGGCCAGGCTTTTCTGGTCTGCGGCGCGGTGCTCGTGATTGCCGCGCTGATCGGGCAGCCCTGGATGGACACGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGATgcgc     >  5:182887/1‑140 (MQ=255)                                                                                                                                           |                                                                                                                                             CTCCGTGGGGCCTGCCATGCTGGCGGAGTTCACGCCCAGCGGGCAGCGCGGCGGCATTCTGGCGATCGGCAACGGTATCGCCTCGTTGGCCGGGCTGTCGGCACCGGTGGTCACCGGTTTGCTGGTGCAGGGCGCCGGGGCCGGGCAC‑ACGGCAGGGTTTGGCCAGGGTTTTCTGGTGTGCGGCGCGGTGCTGGTGATTGCCGGGCTGATCGGGCTGGCCTGGATGGACCCGCAGAAAACCCGGCAACGTCTGGTGCAGGTGGGCACGGCTGCGCCTG  >  NC_002947/2319995‑2320272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.