New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2480384 = | 52 (1.230) | 3 (0.070) | 3/246 | NT | 6.3% | coding (177/393 nt) | PP_2174 | hypothetical protein |
? | NC_002947 | 2480429 = | 39 (0.970) | coding (132/393 nt) | PP_2174 | hypothetical protein |
GGGCAGAAAAGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGC > NC_002947/2480237‑2480529 | tgcacggaagcgccaatgacagaggcataccaaggaagctgcttgtgcgcagccgtctcttacctgctactcaccccacccaaggcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacgg < 5:75791‑M1/2‑1 (MQ=255) tgcacggaagcgccaatgacagaggcataccaaggaagctgcttgtgcgcagccgtctcttacctgctactcaccccacccaaggcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacgg < 6:129017‑M1/2‑1 (MQ=255) cacggaagcgccaatgacagaggcataccaaggaagctgcttgtgcgcagccgtctcttacctgctactcaccccacccaaggcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCa > 6:75791‑M1/146‑149 (MQ=255) cAGAAAAGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAGAGGCCTTGATGCTGGCAg > 4:166935/1‑149 (MQ=255) aGAAAAGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAgc < 7:112723/149‑1 (MQ=255) aGAAAAGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAgc > 3:11767/1‑149 (MQ=255) aaaGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGcgcc > 6:75827/1‑149 (MQ=255) aaaGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGcgcc > 6:143771/1‑149 (MQ=255) ggAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCcgcg > 6:172187/1‑149 (MQ=255) aGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCa < 4:11767/149‑1 (MQ=255) cAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTAtt > 7:89076/1‑149 (MQ=255) aaGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTc < 8:176981/149‑1 (MQ=255) aGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCa < 8:70741/142‑1 (MQ=255) aGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCa > 7:70741/1‑142 (MQ=255) aTCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGcgcg > 7:22281/1‑148 (MQ=255) tCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGCATGCTGCGAATACTGCGCgg < 2:34040/148‑1 (MQ=255) tCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGCATGCTGCGAATACTGCGCgg > 1:34040/1‑148 (MQ=255) tCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAAtgctg > 1:203073/1‑149 (MQ=255) aGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCg < 8:89076/149‑1 (MQ=255) cgcagccgtctcttacctgctactcaccccacccaaggcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTa > 4:245948‑M1/101‑148 (MQ=255) ggCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTAc > 7:130457/1‑148 (MQ=255) aaaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAg < 7:27645/149‑1 (MQ=255) aaaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAg > 8:156092/1‑149 (MQ=255) aaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGc < 2:256967/149‑1 (MQ=255) tCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGaa > 1:142955/1‑149 (MQ=255) ccTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGAATTCGCAGCATGCTGCGAGGAATGCTCCAGTACGAAGAGAAGgc > 8:172458/1‑149 (MQ=255) gcgcGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGcc < 5:143771/149‑1 (MQ=255) tGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGAc < 3:109126/149‑1 (MQ=255) aCCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtt < 2:142955/149‑1 (MQ=255) cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGaa > 7:179753/1‑126 (MQ=255) cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGaa < 8:179753/126‑1 (MQ=255) cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtttt > 7:8398/1‑149 (MQ=255) cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtttt > 3:4022/1‑149 (MQ=255) gcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACg < 4:3739‑M1/50‑1 (MQ=255) gcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACg > 3:3739‑M1/64‑113 (MQ=255) cACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtg > 5:129017/1‑149 (MQ=255) aCTCCGTGCAGAACTCGCGCGTAACAGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtgg < 7:156092/149‑1 (MQ=255) cTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtgg > 5:267151/1‑148 (MQ=255) aGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCt > 3:238827/1‑148 (MQ=255) tCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc > 7:85081/1‑149 (MQ=255) tCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc > 2:57511/1‑149 (MQ=255) gcgcgTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCg > 1:252771/1‑60 (MQ=255) gcgcgTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCg < 2:252771/60‑1 (MQ=255) ccGTCGGTGATGAAGAACAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGCAGCGAATGCGGCGCCGGGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg < 5:172187/149‑1 (MQ=255) ccGTAGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg < 4:4022/149‑1 (MQ=255) gTCGGTGATGATGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt > 2:18760/1‑149 (MQ=255) gTCGGTGATGATGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt < 1:18760/149‑1 (MQ=255) gTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt < 8:22281/149‑1 (MQ=255) tCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggtg < 4:238827/149‑1 (MQ=255) tgaAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTTCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCTGCACTGGCTGCAGTGGCAGTTGCTCACTGCCTTGGGTTGTGTGAGTAGCa < 3:206108/149‑1 (MQ=255) gaagaaAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg > 4:118176/1‑149 (MQ=255) aagaagAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAgg < 3:166935/149‑1 (MQ=255) ggCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc < 7:174704/120‑1 (MQ=255) ggCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc > 8:174704/1‑120 (MQ=255) gCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGAc < 8:130457/149‑1 (MQ=255) cTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTc < 6:131102/112‑1 (MQ=255) cTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTc > 5:131102/1‑112 (MQ=255) gATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg > 7:30810/1‑124 (MQ=255) gATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg < 8:30810/124‑1 (MQ=255) cTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTgcgc < 8:8398/148‑1 (MQ=255) GGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg > 2:134093‑M1/1‑129 (MQ=255) GGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg < 1:134093‑M1/129‑1 (MQ=255) | GGGCAGAAAAGGAGTATCAAGCGTTCCCAGTGCTATCGAAATCCAGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGC > NC_002947/2480237‑2480529 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |