New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2480384 =	52 (1.230)	3 (0.070)	3/246	NT	6.3%	coding (177/393 nt)	PP_2174	hypothetical protein
	?	NC_002947	2480429 =	39 (0.970)					coding (132/393 nt)	PP_2174	hypothetical protein

AGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATGCCTCTGTCATTGGCGCTTCCGTGCA  >  NC_002947/2480281‑2480575                                                                                                                                                     |                                                                                                                                                   aGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCg                                                                                                                                                    <  8:89076/149‑1 (MQ=255)    cgcagccgtctcttacctgctactcaccccacccaaggcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTa                                                                                                                                                  >  4:245948‑M1/101‑148 (MQ=255)     ggCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTAc                                                                                                                                                 >  7:130457/1‑148 (MQ=255)        aaaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAg                                                                                                                                             >  8:156092/1‑149 (MQ=255)        aaaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAg                                                                                                                                             <  7:27645/149‑1 (MQ=255)         aaCTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGc                                                                                                                                            <  2:256967/149‑1 (MQ=255)            tCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGaa                                                                                                                                         >  1:142955/1‑149 (MQ=255)               ccTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGAATTCGCAGCATGCTGCGAGGAATGCTCCAGTACGAAGAGAAGgc                                                                                                                                      >  8:172458/1‑149 (MQ=255)                     gcgcGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGcc                                                                                                                                <  5:143771/149‑1 (MQ=255)                          tGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGAc                                                                                                                           <  3:109126/149‑1 (MQ=255)                            aCCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtt                                                                                                                         <  2:142955/149‑1 (MQ=255)                              cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGaa                                                                                                                                              >  7:179753/1‑126 (MQ=255)                              cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGaa                                                                                                                                              <  8:179753/126‑1 (MQ=255)                              cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtttt                                                                                                                       >  7:8398/1‑149 (MQ=255)                              cAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACtttt                                                                                                                       >  3:4022/1‑149 (MQ=255)                                         gcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACg                                                                                                                                                >  3:3739‑M1/64‑113 (MQ=255)                                         gcagtgagccactgccactgcagccagtgccgcaaaagtcacggcgccgcattcgcttcgtacGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACg                                                                                                                                                <  4:3739‑M1/50‑1 (MQ=255)                                                cACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtg                                                                                                     >  5:129017/1‑149 (MQ=255)                                                 aCTCCGTGCAGAACTCGCGCGTAACAGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtgg                                                                                                    <  7:156092/149‑1 (MQ=255)                                                  cTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTgcagtgg                                                                                                    >  5:267151/1‑148 (MQ=255)                                                          aGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCt                                                                                            >  3:238827/1‑148 (MQ=255)                                                               tCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      >  2:57511/1‑149 (MQ=255)                                                               tCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      >  7:85081/1‑149 (MQ=255)                                                                         ccGTCGGTGATGAAGAACAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGCAGCGAATGCGGCGCCGGGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg                                                                            <  5:172187/149‑1 (MQ=255)                                                                         ccGTAGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg                                                                            <  4:4022/149‑1 (MQ=255)                                                                           gTCGGTGATGATGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt                                                                          <  1:18760/149‑1 (MQ=255)                                                                           gTCGGTGATGATGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt                                                                          >  2:18760/1‑149 (MQ=255)                                                                           gTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggt                                                                          <  8:22281/149‑1 (MQ=255)                                                                            tCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTgggtggggtg                                                                         <  4:238827/149‑1 (MQ=255)                                                                                   tgaAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTTCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCTGCACTGGCTGCAGTGGCAGTTGCTCACTGCCTTGGGTTGTGTGAGTAGCa                                                                  <  3:206108/149‑1 (MQ=255)                                                                                    gaagaaAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg                                                                 >  4:118176/1‑149 (MQ=255)                                                                                     aagaagAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAgg                                                                <  3:166935/149‑1 (MQ=255)                                                                                            ggCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      <  7:174704/120‑1 (MQ=255)                                                                                            ggCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      >  8:174704/1‑120 (MQ=255)                                                                                             gCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGAc                                                        <  8:130457/149‑1 (MQ=255)                                                                                               cTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTc                                                                                           <  6:131102/112‑1 (MQ=255)                                                                                               cTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTc                                                                                           >  5:131102/1‑112 (MQ=255)                                                                                                  gATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg                                                                            <  8:30810/124‑1 (MQ=255)                                                                                                  gATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTtgggtggg                                                                            >  7:30810/1‑124 (MQ=255)                                                                                                   cgtacggcagcattccgcgcagcatgctgcgaatactgcgcggcgctgccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      >  3:3739‑M2/51‑113 (MQ=255)                                                                                                   cgtacggcagcattccgcgcagcatgctgcgaatactgcgcggcgctgccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGc                                                                                      <  4:3739‑M2/63‑1 (MQ=255)                                                                                                     tacggcagcattccgcgcagcatgctgcgaatactgcgcggcgctgccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTgcg                                                 >  4:245948‑M2/49‑148 (MQ=255)                                                                                                      cTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTgcgc                                                <  8:8398/148‑1 (MQ=255)                                                                                                        GGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg                                                                 <  1:134093‑M1/129‑1 (MQ=255)                                                                                                        GGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAg                                                                 >  2:134093‑M1/1‑129 (MQ=255)                                                                                                                   gcAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCt                                  >  5:54714/1‑149 (MQ=255)                                                                                                                    cAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCtt                                 <  2:203073/149‑1 (MQ=255)                                                                                                                     aGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTg                                <  6:267151/149‑1 (MQ=255)                                                                                                                          tCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATg                           >  6:57435/1‑149 (MQ=255)                                                                                                                                                 tgccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATGCCTCTGTCATTGGCGCTTCCGTg    >  6:75791‑M2/5‑149 (MQ=255)                                                                                                                                                   ccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATGCCTCTGTCATTGGCGCTTCCGTGCa  <  6:129017‑M2/147‑1 (MQ=255)                                                                                                                                                   ccGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATGCCTCTGTCATTGGCGCTTCCGTGCa  <  5:75791‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGTCGGCAAACTCACCTTGGGCGCGTGACCAGAACAAGGTCGAGCCGCACTCCGTGCAGAACTCGCGCGTAACCGTCGGTGATGAAGAAAAGGCCTTGATGCTGGCAGCGCCGCGCAGTATTCGCAGCATGCTGCGCGGAATGCTGCCGTACGAAGCGAATGCGGCGCCGTGACTTTTGCGGCACTGGCTGCAGTGGCAGTGGCTCACTGCCTTGGGTGGGGTGAGTAGCAGGTAAGAGACGGCTGCGCACAAGCAGCTTCCTTGGTATGCCTCTGTCATTGGCGCTTCCGTGCA  >  NC_002947/2480281‑2480575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.