New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2510535	36 (0.850)	4 (0.100)	4/240	NT	10.5%	coding (1196/1725 nt)	copA‑I	copper resistance protein A
	?	NC_002947	= 2510556	35 (0.890)					coding (1175/1725 nt)	copA‑I	copper resistance protein A

GGCTGCGCAGGTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGC  >  NC_002947/2510389‑2510683                                                                                                                                                   |                                                                                                                                                     ggCTGCGCAGGTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGa                                                                                                                                                     >  3:73124/1‑148 (MQ=255)        cAGGTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATggcgg                                                                                                                                             >  4:244412/1‑149 (MQ=255)          ggTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGgcggcg                                                                                                                                           >  5:30494/1‑149 (MQ=255)           gTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGt                                                                                                                                          <  1:32429/149‑1 (MQ=255)           gTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGt                                                                                                                                          >  2:110513/1‑149 (MQ=255)            tCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTg                                                                                                                                         <  2:83872/149‑1 (MQ=255)              ggCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGt                                                                                                                                       <  5:267519/149‑1 (MQ=255)                      tCAGCACGCGGCGACCATTGTCACGCAGGACTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGGTTGACGGATCGGGTGTTGGTGCATGGCCGACATGGCGGCGGGGTCCATCCcg                                                                                                                               <  4:2371‑M2/149‑3 (MQ=255)                         gCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGTTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACcggc                                                                                                                             <  6:81688‑M2/148‑5 (MQ=255)                                            aCGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATg                                                                                                          <  7:9621/148‑1 (MQ=255)                                               cAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCt                                                                                                      <  6:646/149‑1 (MQ=255)                                                        gCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTc                                                                                             >  5:94195/1‑149 (MQ=255)                                                          cAGGATCGGCCAGGTTGGGGCGCGGTGCCATTGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATggcggc                                                                                                                                            <  2:225245/100‑1 (MQ=255)                                                          cAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGgtatggaccacgccgccatgtcggccatgca                                                                                                                       >  4:259497‑M1/1‑90 (MQ=255)                                                          cAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGgtatggaccacgccgccatgtcggccatgca                                                                                                                       <  3:259497‑M1/121‑32 (MQ=255)                                                          cAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCtg                                                                                           >  2:216429/1‑149 (MQ=255)                                                                   ccAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATg                                                                                  >  1:115031/1‑149 (MQ=255)                                                                   ccAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATg                                                                                  >  4:239382/1‑149 (MQ=255)                                                                     aGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGcc                                                                                <  1:110513/149‑1 (MQ=255)                                                                           gggCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCAt                                                                          <  1:216429/149‑1 (MQ=255)                                                                            ggCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGgtatggaccacgccgccatgtcggccatgc                                                                                                                        >  1:113143‑M1/1‑72 (MQ=255)                                                                            ggCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGgtatggaccacgccgccatgtcggccatgc                                                                                                                        <  2:113143‑M1/102‑31 (MQ=255)                                                                                       aTGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATgcc                                                              >  8:42955/1‑149 (MQ=255)                                                                                              gCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCAt                                                                                   <  1:173079/121‑1 (MQ=255)                                                                                              gCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCAt                                                                                   >  2:173079/1‑121 (MQ=255)                                                                                               cATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTgg                                                       <  7:42955/148‑1 (MQ=255)                                                                                                 tGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTTGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGccc                                                    <  4:100456/149‑1 (MQ=255)                                                                                                 tGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGt                                                                                                               >  4:154156/1‑90 (MQ=255)                                                                                                   tCCACCAGCGGGTTGTCGGTTTCACTGATCGGTTGTTGCTGCTTGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCACCCATGCCGCCGTGGCCCAt                                                  <  4:60422/149‑1 (MQ=255)                                                                                                   tCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCa                                                   <  3:239382/148‑1 (MQ=255)                                                                                                   tCCACCAGCGGGTTGTCGGGTTCACTGAGCGGGTGTTGCTGCAGGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCa                                                   <  6:265293/148‑1 (MQ=255)                                                                                                    ccaccaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATg                                                 >  3:173456/1‑149 (MQ=255)                                                                                                    ccaccaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATg                                                 >  1:75258/1‑149 (MQ=255)                                                                                                      accaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTc                                               <  6:202389/149‑1 (MQ=255)                                                                                                         agagggTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGGAGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTc                                            <  5:81688/146‑1 (MQ=255)                                                                                                              gTTTTCGGTTTCTCTGATGGGGTTTTTCTGCATGGACGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCTCCATGGCATCCATGCCGCCGTTGCCCATGTCTTCCa                                          <  5:114688/146‑1 (MQ=255)                                                                                                               ttGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCt                                      <  4:73124/149‑1 (MQ=255)                                                                                                                          aCTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGgc                           >  3:217998/1‑149 (MQ=255)                                                                                                                                 gggTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTc                    >  8:114093/1‑149 (MQ=255)                                                                                                                                   gtgtTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCGATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCgg                  <  6:181096/149‑1 (MQ=255)                                                                                                                                      ttGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCgggg                <  6:94195/148‑1 (MQ=255)                                                                                                                                         cgtcATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTTCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGggcag            <  7:168436/146‑1 (MQ=255)                                                                                                                                          tgcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctg                                       >  4:259497‑M2/1‑31 (MQ=255)                                                                                                                                          tgcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctg                                       <  3:259497‑M2/121‑91 (MQ=255)                                                                                                                                           gcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgcc                                                         <  2:113143‑M2/102‑73 (MQ=255)                                                                                                                                           gcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgcc                                                         >  1:113143‑M2/1‑30 (MQ=255)                                                                                                                                             aTGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCAc        <  2:115031/149‑1 (MQ=255)                                                                                                                                                gCCGgtatggaccacgccgccatgtcggccatgcagcaacaaccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctggcataggcctgcgtgacaatggtcgccgcgtgc      <  6:81688‑M1/148‑145 (MQ=255)                                                                                                                                                  cGggatggaccccgccgccatgtcggccatgcaccaacacccgatccgtcaacccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctggcatagtcctgcgtgacaatggtcgccgcgtgctga   <  4:2371‑M1/149‑148 (MQ=255)                                                                                                                                                   gACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGgcgc  <  6:30494/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GGCTGCGCAGGTCGGCGTAGGTCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGC  >  NC_002947/2510389‑2510683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.