New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2510535	36 (0.850)	4 (0.100)	4/240	NT	10.5%	coding (1196/1725 nt)	copA‑I	copper resistance protein A
	?	NC_002947	= 2510556	35 (0.890)					coding (1175/1725 nt)	copA‑I	copper resistance protein A

TCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCTGCAGCCCGGCCG  >  NC_002947/2510410‑2510697                                                                                                                                                   |                                                                                                                                              tCAGCACGCGGCGACCATTGTCACGCAGGACTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGGTTGACGGATCGGGTGTTGGTGCATGGCCGACATGGCGGCGGGGTCCATCCcg                                                                                                                                             <  4:2371‑M2/149‑3 (MQ=255)    gCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGTTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACcggc                                                                                                                                           <  6:81688‑M2/148‑5 (MQ=255)                       aCGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATg                                                                                                                        <  7:9621/148‑1 (MQ=255)                          cAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCt                                                                                                                    <  6:646/149‑1 (MQ=255)                                   gCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTc                                                                                                           >  5:94195/1‑149 (MQ=255)                                     cAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCtg                                                                                                         >  2:216429/1‑149 (MQ=255)                                              ccAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATg                                                                                                >  1:115031/1‑149 (MQ=255)                                              ccAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATg                                                                                                >  4:239382/1‑149 (MQ=255)                                                aGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGcc                                                                                              <  1:110513/149‑1 (MQ=255)                                                      gggCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCAt                                                                                        <  1:216429/149‑1 (MQ=255)                                                                  aTGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATgcc                                                                            >  8:42955/1‑149 (MQ=255)                                                                         gCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCAt                                                                                                 >  2:173079/1‑121 (MQ=255)                                                                         gCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCAt                                                                                                 <  1:173079/121‑1 (MQ=255)                                                                          cATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTgg                                                                     <  7:42955/148‑1 (MQ=255)                                                                            tGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTTGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGccc                                                                  <  4:100456/149‑1 (MQ=255)                                                                            tGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGt                                                                                                                             >  4:154156/1‑90 (MQ=255)                                                                              tCCACCAGCGGGTTGTCGGTTTCACTGATCGGTTGTTGCTGCTTGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCACCCATGCCGCCGTGGCCCAt                                                                <  4:60422/149‑1 (MQ=255)                                                                              tCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCa                                                                 <  3:239382/148‑1 (MQ=255)                                                                              tCCACCAGCGGGTTGTCGGGTTCACTGAGCGGGTGTTGCTGCAGGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCa                                                                 <  6:265293/148‑1 (MQ=255)                                                                               ccaccaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATg                                                               >  3:173456/1‑149 (MQ=255)                                                                               ccaccaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATg                                                               >  1:75258/1‑149 (MQ=255)                                                                                 accaGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTc                                                             <  6:202389/149‑1 (MQ=255)                                                                                    agagggTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGGAGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTc                                                          <  5:81688/146‑1 (MQ=255)                                                                                         gTTTTCGGTTTCTCTGATGGGGTTTTTCTGCATGGACGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCTCCATGGCATCCATGCCGCCGTTGCCCATGTCTTCCa                                                        <  5:114688/146‑1 (MQ=255)                                                                                          ttGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCt                                                    <  4:73124/149‑1 (MQ=255)                                                                                                     aCTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGgc                                         >  3:217998/1‑149 (MQ=255)                                                                                                            gggTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTc                                  >  8:114093/1‑149 (MQ=255)                                                                                                              gtgtTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCGATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCgg                                <  6:181096/149‑1 (MQ=255)                                                                                                                 ttGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCgggg                              <  6:94195/148‑1 (MQ=255)                                                                                                                    cgtcATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTTCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGggcag                          <  7:168436/146‑1 (MQ=255)                                                                                                                     tgcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctg                                                     >  4:259497‑M2/1‑31 (MQ=255)                                                                                                                     tgcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgccccaacctggccgatcctg                                                     <  3:259497‑M2/121‑91 (MQ=255)                                                                                                                      gcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgcc                                                                       <  2:113143‑M2/102‑73 (MQ=255)                                                                                                                      gcATGGCCGACATGGCGGCGTGGTCCATACcggccatgcagcaacacccgatcagtgaaaccgacaacccgctggtggacatgcagaccatggcaccgcgcc                                                                       >  1:113143‑M2/1‑30 (MQ=255)                                                                                                                        aTGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCAc                      <  2:115031/149‑1 (MQ=255)                                                                                                                              gACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGgcgc                <  6:30494/149‑1 (MQ=255)                                                                                                                               aCATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGcc               >  6:193645/1‑149 (MQ=255)                                                                                                                                cATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCt              <  7:215929/149‑1 (MQ=255)                                                                                                                                     cggcgTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCTGCAGc         >  7:32821/1‑149 (MQ=255)                                                                                                                                           gggccATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCTGCAGCCCGGcc   <  3:244412/146‑1 (MQ=255)                                                                                                                                            gTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATACATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCTGCAGCCCGGCCg  >  1:200237/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              TCAGCACGCGGCGACCATTGTCACGCAGGCCTATGCCAGGATCGGCCAGGTTGGGGCGCGGTGCCATGGTCTGCATGTCCACCAGCGGGTTGTCGGTTTCACTGATCGGGTGTTGCTGCATGGCCGACATGGCGGCGTGGTCCATACCGGCCATGCTGCCGTGGTTCATGCCCTGCGGATTTCTGTGGTCCATGCCCGCCATGGCATCCATGCCGCCGTGGCCCATGTCTTCCATGCTCAGCACCGGGCGCGGGTCGGGGGCAGGCACCGGCGCCTGCAGCCCGGCCG  >  NC_002947/2510410‑2510697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.