New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2615239 =	41 (0.970)	4 (0.100)	4/242	NT	9.8%	coding (4178/4710 nt)	PP_2287	internal core protein
	?	NC_002947	2615278 =	35 (0.880)					coding (4217/4710 nt)	PP_2287	internal core protein

TGGACTTCGGGGCCTGGGTTAAGGACTCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAA  >  NC_002947/2615095‑2615373                                                                                                                                                 |                                                                                                                                       ggaacttctggcggttctcctcattcatccccatggaatccagcatggttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTc                                                                                                                                    <  3:219581‑M1/5‑1 (MQ=255)  gaacttctggcggttctcctcattcatccccatggaatccagcatggttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTc                                                                                                                                    <  4:68692‑M1/5‑1 (MQ=255)    aCTTCGGGGCCTGGGATAAGGACTCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAg                                                                                                                                 >  8:141893/1‑149 (MQ=255)         ggggCCTGGGTTAAGGACTCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCAt                                                                                                                            >  6:108136/1‑149 (MQ=255)                   ttAATGACTCCCCTGCTAACTACTCCAGGTTCATTACTGCTAGGCACCGTGATTCTCGCCGTGTCATCAAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGtt                                                                                                                               <  8:207963/136‑1 (MQ=255)                    ctcattcatccccatggaatccagcatggttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTCCAGTTCATGGCCTTCACCa                                                                                                                 <  8:95058‑M1/24‑1 (MQ=255)                           tCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACgg                                                                                                          >  2:195254/1‑149 (MQ=255)                           tCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACgg                                                                                                          >  6:91241/1‑149 (MQ=255)                              ccTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTg                                                                                                       >  7:29417/1‑149 (MQ=255)                               cTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTgg                                                                                                      <  6:86727/149‑1 (MQ=255)                                  agaACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAAc                                                                                                   <  8:29417/149‑1 (MQ=255)                                     actactCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAg                                                                                                >  5:250878/1‑149 (MQ=255)                                         ctCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTcc                                                                                             <  5:108136/148‑1 (MQ=255)                                         cagcatggttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCa                                                                                            >  7:95058‑M1/105‑149 (MQ=255)                                            cAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCCCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATg                                                                                          <  7:141893/148‑1 (MQ=255)                                             aGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTg                                                                                                       >  7:120161/1‑134 (MQ=255)                                             aGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTg                                                                                                       <  8:120161/134‑1 (MQ=255)                                                 ttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGt                                                                                               >  4:137078‑M1/97‑138 (MQ=255)                                                 ttcggcccatgtaggtcaggctcgccaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggactTGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGt                                                                                               <  3:137078‑M1/42‑1 (MQ=255)                                                   aTGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTcgc                                                                                  >  3:92444/1‑149 (MQ=255)                                                   aTGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTcgc                                                                                  >  3:88581/1‑149 (MQ=255)                                                     gACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTcgccg                                                                                >  4:79585/1‑149 (MQ=255)                                                      aCTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTcgccgc                                                                               <  6:250878/149‑1 (MQ=255)                                                             tGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAacccc                                                                        >  7:112397/1‑147 (MQ=255)                                                              gCACCGTGAGTCTCGCCGTGTCATCAAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACAATGCACGGCTGGAACAAGTCCATGCTCTTCGTCGCGAaccacc                                                                       >  6:64312/1‑149 (MQ=255)                                                                 ccGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCgg                                                                     >  1:248111/1‑148 (MQ=255)                                                                      aGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTgg                                                               <  5:91241/149‑1 (MQ=255)                                                                        tctcGCCGTGTCAACCAGCAGAACGCCCTTAGCTCCATGATTCCCCTCATGGGGACCACACTAGGAAAAGCCAGGTACCAGTACATGGCCTACCCCATGCACGGCTGGAACAGGACCATGCTCTACGCCCCGAACCACCGGCACGGGGc                                                             >  2:190037/1‑149 (MQ=255)                                                                            gCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATTTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGcc                                                            <  4:92444/146‑1 (MQ=255)                                                                            gCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGcc                                                            <  4:88581/146‑1 (MQ=255)                                                                             ccGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAAc                                                                                                   >  8:138047/1‑106 (MQ=255)                                                                                   cATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCa                                                  >  2:266568/1‑149 (MQ=255)                                                                                     tCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTAGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACt                                                >  3:68692/1‑149 (MQ=255)                                                                                       cAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTg                                               <  4:241791/148‑1 (MQ=255)                                                                                        aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAcc                                                                                                                  >  1:195794/1‑80 (MQ=255)                                                                                        aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAcc                                                                                                                  <  2:195794/80‑1 (MQ=255)                                                                                        aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTc                                             >  5:258839/1‑149 (MQ=255)                                                                                                 aCCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACggg                                    <  2:248111/149‑1 (MQ=255)                                                                                                  ccTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACgggg                                   >  6:161071/1‑149 (MQ=255)                                                                                                   cTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCCCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACggggg                                  <  1:195254/149‑1 (MQ=255)                                                                                                       gCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTc                              <  5:161071/149‑1 (MQ=255)                                                                                                               aTTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAg                      >  3:162878/1‑149 (MQ=255)                                                                                                                 tCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGc                     <  4:162878/148‑1 (MQ=255)                                                                                                                     cTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                <  3:79585/149‑1 (MQ=255)                                                                                                                          ggggACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACa           >  3:170145/1‑149 (MQ=255)                                                                                                                                cacaCTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGcc     >  5:41079/1‑149 (MQ=255)                                                                                                                                   acTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGaa  <  1:134768/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                       TGGACTTCGGGGCCTGGGTTAAGGACTCCCCTGAGAACTACTCCAGGTTCATGACTGCGATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAA  >  NC_002947/2615095‑2615373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.