New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2872578 =	42 (0.990)	5 (0.120)	4/248	NT	10.8%	coding (497/1164 nt)	PP_2525	hypothetical protein
	?	NC_002947	2872648 =	42 (1.040)					coding (427/1164 nt)	PP_2525	hypothetical protein

CGGCAAGGCGCGTCACGGTCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCG  >  NC_002947/2872443‑2872722                                                                                                                                        |                                                                                                                                                 cGGCAAGGCGCGTCACGGGCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCAc                                                                                                                                     >  3:246247/1‑149 (MQ=255)     caccgaagacctcggttttgccatcaccctcggcctgccaattcccctgccgtatccgagcgcgttcatgctcgaccctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTGCTGATCGAGCACTGcc                                                                                                                                 <  7:46494‑M1/18‑1 (MQ=255)          gcgTCACGGTCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCg                                                                                                                            <  2:88696/149‑1 (MQ=255)             tCACGGTCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGtt                                                                                                                         >  8:45894/1‑149 (MQ=255)             tCACGGTCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGtt                                                                                                                         >  4:169167/1‑149 (MQ=255)                   tCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCa                                                                                                                                      <  8:89175/130‑1 (MQ=255)                   tCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCa                                                                                                                                      >  7:89175/1‑130 (MQ=255)                   tCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTc                                                                                                                   >  7:145168/1‑149 (MQ=255)                       tCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCgg                                                                                                               >  2:200428/1‑149 (MQ=255)                          ggAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGcc                                                                                                            >  2:162107/1‑149 (MQ=255)                            tcaccctcggcctgccaattcccctgccgtatccgagcgcgttcatgctcgaccctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTg                                                                                                                                                 >  4:28990‑M1/109‑110 (MQ=255)                            tcaccctcggcctgccaattcccctgccgtatccgagcgcgttcatgctcgaccctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTg                                                                                                                                                 <  3:28990‑M1/2‑1 (MQ=255)                              gTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCggg                                                                                                              >  1:194225/1‑143 (MQ=255)                              gTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCggg                                                                                                              <  2:194225/143‑1 (MQ=255)                                gATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCAc                                                                                                       <  8:145168/148‑1 (MQ=255)                                     tAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAggg                                                                                                  >  2:189602/1‑148 (MQ=255)                                     tAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAggg                                                                                                  >  8:2333/1‑148 (MQ=255)                                     tAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGc                                                                                                 <  3:169167/149‑1 (MQ=255)                                             ccAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTcgc                                                                                                                 >  4:32451/1‑125 (MQ=255)                                             ccAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTcgc                                                                                                                 <  3:32451/125‑1 (MQ=255)                                                gCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCt                                                                                      <  4:246247/149‑1 (MQ=255)                                                  tGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGc                                                                                                                                       >  3:138332/1‑98 (MQ=255)                                                  tGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGc                                                                                                                                       <  4:138332/98‑1 (MQ=255)                                                      ccgtatccgagcgcgttcatgctcgaccctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCa                                                                                >  8:46494‑M1/83‑149 (MQ=255)                                                           aCGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAg                                                                           >  6:69042/1‑149 (MQ=255)                                                                     gTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                 <  7:45894/149‑1 (MQ=255)                                                                         ccGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGAc                                                                                  >  3:40588/1‑128 (MQ=255)                                                                         ccGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGAc                                                                                  <  4:40588/128‑1 (MQ=255)                                                                          cGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAg                                                            >  1:240221/1‑149 (MQ=255)                                                                                 cctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGc                                                                              >  2:258948‑M1/56‑124 (MQ=255)                                                                                 cctgaaataaagtgcgaggccatctggggcgctggcgcctatcgcccctcttcctTGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGc                                                                              <  1:258948‑M1/69‑1 (MQ=255)                                                                                 cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgcgc                                                        <  7:32071/146‑1 (MQ=255)                                                                                 cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                          <  7:2333/144‑1 (MQ=255)                                                                                 cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAg                                                     >  5:168020/1‑149 (MQ=255)                                                                                          gCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                 <  5:20282/128‑1 (MQ=255)                                                                                          gCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                 >  6:20282/1‑128 (MQ=255)                                                                                               gccggccgACGATTTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATgtc                                        <  1:162107/148‑3 (MQ=255)                                                                                               cgaggccatctggggcgctggcgcctatcgcccctcttcctTGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGc                                                                              >  1:201008‑M1/42‑110 (MQ=255)                                                                                                     cgacgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                          <  6:19167/124‑1 (MQ=255)                                                                                                     cgacgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                          >  5:19167/1‑124 (MQ=255)                                                                                                       acgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACtt                               <  5:69042/149‑1 (MQ=255)                                                                                                         gaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTa                             <  2:240221/149‑1 (MQ=255)                                                                                                          aTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGTGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTAt                            <  5:100327/149‑1 (MQ=255)                                                                                                          aTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTAt                            <  1:262200/149‑1 (MQ=255)                                                                                                             ttGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTAttt                          >  8:214780/1‑148 (MQ=255)                                                                                                                           gccgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTAttt                          >  6:253483/1‑134 (MQ=255)                                                                                                                           gccgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTAttt                          <  5:253483/134‑1 (MQ=255)                                                                                                                             cgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAAc         <  1:200428/149‑1 (MQ=255)                                                                                                                                 gTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACgcgc     >  7:137498/1‑149 (MQ=255)                                                                                                                                   cAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTc   >  4:147711/1‑149 (MQ=255)                                                                                                                                   cAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTc   >  4:144248/1‑149 (MQ=255)                                                                                                                                    aGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCg  >  5:55332/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                                 CGGCAAGGCGCGTCACGGTCAATCCGGAAGTGATCGTAAAACCGCCAGCTGTTGATGAACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCAGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCG  >  NC_002947/2872443‑2872722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.