New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2872578 =	42 (0.990)	5 (0.120)	4/248	NT	10.8%	coding (497/1164 nt)	PP_2525	hypothetical protein
	?	NC_002947	2872648 =	42 (1.040)					coding (427/1164 nt)	PP_2525	hypothetical protein

ACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGG  >  NC_002947/2872501‑2872790                                                                                                                                                    |                                                                                                                                                aCGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAg                                                                                                                                                >  6:69042/1‑149 (MQ=255)           gTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                                                                                      <  7:45894/149‑1 (MQ=255)                cGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAg                                                                                                                                 >  1:240221/1‑149 (MQ=255)                       cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgcgc                                                                                                                             <  7:32071/146‑1 (MQ=255)                       cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                                                                                               <  7:2333/144‑1 (MQ=255)                       cGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑Ag                                                                                                                         >  5:168020/1‑149 (MQ=255)                                gCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                                                                                      >  6:20282/1‑128 (MQ=255)                                gCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGc                                                                                                                                      <  5:20282/128‑1 (MQ=255)                                     gccggccgACGATTTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATgtc                                                                                                            <  1:162107/148‑3 (MQ=255)                                           cgacgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                                                                                               <  6:19167/124‑1 (MQ=255)                                           cgacgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGgc                                                                                                                               >  5:19167/1‑124 (MQ=255)                                             acgaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACtt                                                                                                   <  5:69042/149‑1 (MQ=255)                                               gaTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTa                                                                                                 <  2:240221/149‑1 (MQ=255)                                                aTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGTGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTAt                                                                                                <  5:100327/149‑1 (MQ=255)                                                aTGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTAt                                                                                                <  1:262200/149‑1 (MQ=255)                                                   ttGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTAttt                                                                                              >  8:214780/1‑148 (MQ=255)                                                                 gccgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTAttt                                                                                              <  5:253483/134‑1 (MQ=255)                                                                 gccgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTAttt                                                                                              >  6:253483/1‑134 (MQ=255)                                                                   cgcTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAAc                                                                             <  1:200428/149‑1 (MQ=255)                                                                       gTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACgcgc                                                                         >  7:137498/1‑149 (MQ=255)                                                                         cAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTc                                                                       >  4:144248/1‑149 (MQ=255)                                                                         cAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTc                                                                       >  4:147711/1‑149 (MQ=255)                                                                          aGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCg                                                                      >  5:55332/1‑149 (MQ=255)                                                                               gctggtcgagcgcaagaatgccctggtgcgggcccgcgagggcaaccgctgggcagtgctcgatcagcaAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCg                                                                                                        >  1:201008‑M2/70‑110 (MQ=255)                                                                               gctggtcgagcgcaagaatgccctggtgcgggcccgcgagggcaaccgctgggcagtgctcgatcagcaAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAgg                                                                                          >  2:258948‑M2/70‑124 (MQ=255)                                                                               gctggtcgagcgcaagaatgccctggtgcgggcccgcgagggcaaccgctgggcagtgctcgatcagcaAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAgg                                                                                          <  1:258948‑M2/55‑1 (MQ=255)                                                                                 tggtcgagcgcaagaatgccctggtgcgggcccgcgagggcaaccgctgggcagtgctcgatcagcaAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACgg                                                               >  8:46494‑M2/68‑149 (MQ=255)                                                                                       aGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAggg                                                          >  7:33450/1‑148 (MQ=255)                                                                                           cTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAAtt                                                     <  3:144248/149‑1 (MQ=255)                                                                                           cTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAAtt                                                     <  3:147711/149‑1 (MQ=255)                                                                                            tGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTg                                                    >  5:255302/1‑149 (MQ=255)                                                                                              cccAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAAtt                                                     <  6:255302/146‑1 (MQ=255)                                                                                              cccAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTgg                                                   <  6:168020/148‑1 (MQ=255)                                                                                                cAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAg                                                >  8:37247/1‑149 (MQ=255)                                                                                                     gTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGCGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGcc                                             >  8:160848/1‑147 (MQ=255)                                                                                                          ccTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑CGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGt                                       >  5:277120/1‑148 (MQ=255)                                                                                                          ccTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGt                                       >  7:122074/1‑148 (MQ=255)                                                                                                          ccTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGt                                       >  8:144346/1‑148 (MQ=255)                                                                                                              gcgGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGAt                                    <  7:37247/147‑1 (MQ=255)                                                                                                              gcgGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATg                                   <  7:144346/148‑1 (MQ=255)                                                                                                                  gCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCCGACCGCCCCAGATGCCGTCGAACTTAATTTAAGGGGCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCa                                >  1:209645/1‑148 (MQ=255)                                                                                                                   cccGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCaaaa                             >  7:116531/1‑149 (MQ=255)                                                                                                                       cACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGa                         <  6:55332/149‑1 (MQ=255)                                                                                                                        aCCTGGGCATTCTTGCGCTCGACCTGGAAGGAAGTGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTGAGGGTCGATCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAg                        <  8:122074/149‑1 (MQ=255)                                                                                                                        aCCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGCATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAg                        <  1:189602/149‑1 (MQ=255)                                                                                                                                aTTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCgg                <  7:214780/149‑1 (MQ=255)                                                                                                                                  ggcagtgctcgatcagcaAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTg              <  7:46494‑M2/131‑1 (MQ=255)                                                                                                                                        gcTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAg        >  1:118616/1‑149 (MQ=255)                                                                                                                                             aCCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCcag   <  8:137498/149‑1 (MQ=255)                                                                                                                                              ccAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCcagg  >  7:197738/1‑149 (MQ=255)                                                                                                                                                  caAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGa                                     <  3:28990‑M2/108‑1 (MQ=255)                                                                                                                                                  caAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGa                                     >  4:28990‑M2/3‑110 (MQ=255)                                                                                                                                                    |                                                                                                                                                ACGCGCGCAGGTCACCGATCTCCGGTGCCTGGCGTGGCCGGCCGACGATGTTGAAAAAGCTCTCGCCGCTGTCAGCATGCTGATCGAGCACTGCCCAGCGGTTGCCCTCGCGGGCCCGCACCAGGGCATTCTTGCGCTCGACCAGCAAGGAAGAGGGGCGATAGGCGCC‑AGCGCCCCAGATGGCCTCGCACTTTATTTCAGGGTCGAGCATGAACGCGCTCGGATACGGCAGGGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGG  >  NC_002947/2872501‑2872790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.