New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2875791 =	34 (0.810)	3 (0.070)	3/250	NT	9.0%	coding (92/1278 nt)	PP_2528	O‑acetylhomoserine (thiol)‑lyase
	?	NC_002947	2875829 =	28 (0.680)					coding (54/1278 nt)	PP_2528	O‑acetylhomoserine (thiol)‑lyase

CGGCCAGCGCGCCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAGTGGGCAT  >  NC_002947/2875648‑2875939                                                                                                                                                 |                                                                                                                                                     cGGCCAGCGCGCCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCTAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACATGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAaggag                                                                                                                                                 <  1:48966/149‑1 (MQ=255)    ccAGCGCGCCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAggtg                                                                                                                                              <  4:43195/149‑1 (MQ=255)     gggaccgccagaatgatcctccttgacccatgcccactcgccgccgcatgctcgaacgcttccacccacgctcaaggaacgattgcatgaagctggaaacgcttgccatccatgcgggcttcagccccgacccgaccaccAAGGAggtg                                                                                                                                              <  1:9160‑M1/9‑1 (MQ=255)         gcgcCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTg                                                                                                                                         <  5:26850/149‑1 (MQ=255)           gcCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGt                                                                                                                                       <  3:84645/149‑1 (MQ=255)               aCCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTgg                                                                                                                                        >  1:223799/1‑144 (MQ=255)                 cccGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGt                                                                                                                                       <  1:164632/143‑1 (MQ=255)                 cccGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGt                                                                                                                                       >  2:164632/1‑143 (MQ=255)                           aGGGCGGCCATGGTCTGCGTGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCAc                                                                                                                       <  6:188974/149‑1 (MQ=255)                           aGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCAc                                                                                                                       <  3:184838/149‑1 (MQ=255)                           aGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCAc                                                                                                                       <  7:158415/149‑1 (MQ=255)                              gcggcCATGCGCTGCTCGAGCACGTCGTTAGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGc                                                                                                                    >  7:19739/1‑149 (MQ=255)                                     cccactcgccgccgcatgctcgaacgcttccacccacgctcaaggaacgattgcatgaagctggaaacgcttgccatccatgcgggcttcagccccgacccgaccaccAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTtggt                                                                                                              >  2:9160‑M1/109‑149 (MQ=255)                                     cccactcgccgccgcatgctcgaacgcttccacccacgctcaaggaacgattgcatgaagctggaaacgcttgccatccatgcgggcttcagccccgacccgaccaccAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTtggt                                                                                                              <  2:42329‑M1/41‑1 (MQ=255)                                            gccgccgcatgctcgaacgcttccacccacgctcaaggaacgattgcatgaagctggaaacgcttgccatccatgcgggcttcagccccgacccgaccaccAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTggtcgg                                                                                                        >  1:42329‑M1/102‑148 (MQ=255)                                            ctCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTggtcgg                                                                                                        <  6:166686/147‑1 (MQ=255)                                               gAGCACGTCGTTAGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTggtcgggtc                                                                                                     <  8:19739/147‑1 (MQ=255)                                                     gtcgtTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTAAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTcgaaggcgaagg                                                                                                                                                   >  4:130976/1‑95 (MQ=255)                                                     gtcgtTGGTGGGGTTCATGATGAGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTcgaaggcgaagg                                                                                                                                                   <  3:130976/95‑1 (MQ=255)                                                         ttGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAGAGACAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGTTACGGCCACCGCATTGGTGGTCGGTTCGGGGATGAAGc                                                                                          >  1:59287/1‑149 (MQ=255)                                                                    cATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCatggatgg                                                                              >  1:128311/1‑149 (MQ=255)                                                                        atgCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAg                                                                          <  2:128311/149‑1 (MQ=255)                                                                            gcgAATAGATGTTGCCGGCAACCTTCAG‑GTCAAAAAGGTCGGCGCCGTGCTGGGTTTCGTCGAAGGCGAAGGAGGTGGTATTGTa                                                                                                                                      >  5:74637/1‑85 (MQ=255)                                                                                     tGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGAGCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCtt                                                              >  7:173992/1‑148 (MQ=255)                                                                                           cGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTtg                                                                                                                <  3:202280/92‑1 (MQ=255)                                                                                           cGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTtg                                                                                                                >  4:202280/1‑92 (MQ=255)                                                                                                 ccTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTc                                                 <  2:59287/149‑1 (MQ=255)                                                                                                  cTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTcc                                                <  4:62876/149‑1 (MQ=255)                                                                                                          tCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCg                                         >  4:200438/1‑149 (MQ=255)                                                                                                            aaaCAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTcc                                                <  2:230808/140‑1 (MQ=255)                                                                                                            aaaCAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTAGatagtg                                       >  1:230808/1‑144 (MQ=255)                                                                                                              aCAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCgtggg                                     >  3:160417/1‑149 (MQ=255)                                                                                                                        gcCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATACAATCGTTCCTTGAGCGTGGGTGGAAGCGtt                           >  6:210973/1‑149 (MQ=255)                                                                                                                           gTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGa                        <  2:223799/149‑1 (MQ=255)                                                                                                                           gTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACAGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGa                        <  3:200438/149‑1 (MQ=255)                                                                                                                                        tcgAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGtt                                                  >  1:11891/1‑110 (MQ=255)                                                                                                                                        tcgAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGtt                                                  <  2:11891/110‑1 (MQ=255)                                                                                                                                        tcgAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATgcggcggc            >  3:95518/1‑148 (MQ=255)                                                                                                                                          gaaggcgaaggAGGTGGTCTGGTAGATCGGTACGGCCACCCCCTTGGTGGTCGGGTCGGGGCTGAAGCCAGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAg         >  1:184706/1‑149 (MQ=255)                                                                                                                                           aaggcgaaggAGGTGGTCTGGTAGAGCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAGt        <  7:240973/149‑1 (MQ=255)                                                                                                                                              gcgaaggAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGAAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAGTgg      >  1:226250/1‑148 (MQ=255)                                                                                                                                                 AAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAGTGGGCAt  >  8:173992‑M1/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CGGCCAGCGCGCCAACCCCGCCTTCCAGGGCGGCCATGCGCTGCTCGAGCACGTCGTTGGTGGGGTTCATGATGCGCGAATAGATGTTGCCGGCAACCTTCAG‑GTCAAACAGGTCGGCGCCGTGCTGGGTGTCGTCGAAGGCGAAGGAGGTGGTCTGGTAGATCGGTACGGCCACCGCCTTGGTGGTCGGGTCGGGGCTGAAGCCCGCATGGATGGCAAGCGTTTCCAGCTTCATGCAATCGTTCCTTGAGCGTGGGTGGAAGCGTTCGAGCATGCGGCGGCGAGTGGGCAT  >  NC_002947/2875648‑2875939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.