New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2972458	36 (0.850)	3 (0.070)	3/250	NT	8.3%	coding (1416/1713 nt)	PP_2600	hypothetical protein
	?	NC_002947	= 2972519	31 (0.760)					coding (1355/1713 nt)	PP_2600	hypothetical protein

CTCATCCAGTACACGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGC  >  NC_002947/2972317‑2972603                                                                                                                                              |                                                                                                                                                  cTCATCCAGTACACGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCCCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGc                                                                                                                                            <  7:88850/149‑1 (MQ=255)     tCCAGTACACGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGtt                                                                                                                                        >  4:94616/1‑149 (MQ=255)            cacGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGc                                                                                                                                 >  5:147854/1‑149 (MQ=255)             acGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCg                                                                                                                                >  4:222309/1‑149 (MQ=255)             acGGGCATTGCCGTCGCTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACACTGCTTGCGGTTGAACGGCg                                                                                                                                >  2:76730/1‑149 (MQ=255)                             gTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCaaa                                                                                                                >  1:159806/1‑149 (MQ=255)                                   aaCCCGGCAAAGGTGCCAAAACAGCCGGGCTATACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCgg                                                                                                          <  3:144643/149‑1 (MQ=255)                                      ccGGTAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTc                                                                                                       >  2:232870/1‑149 (MQ=255)                                       cGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCGTGTGCTGTGGGTCCCCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAACCGCCGGGTcc                                                                                                      >  7:115067/1‑149 (MQ=255)                                        ggCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCatgcccgtaacggccaggacccggcgtttggccgcggttccacgcc                                                                                                     >  4:28835‑M1/1‑103 (MQ=255)                                         gCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTg                                                                                                    <  3:222309/149‑1 (MQ=255)                                                tGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTa                                                                                             <  1:232870/149‑1 (MQ=255)                                                  ccAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACg                                                                                           >  8:153908/1‑149 (MQ=255)                                                   cAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACgg                                                                                          >  2:57637/1‑149 (MQ=255)                                                    aaaaCAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACggg                                                                                         >  2:99957/1‑149 (MQ=255)                                                    aaaaCAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACggg                                                                                         >  5:266590/1‑149 (MQ=255)                                                           ccGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATgggt                                                                                  >  7:153908‑M2/1‑145 (MQ=255)                                                              ggCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTAtt                                                                               <  3:94616/149‑1 (MQ=255)                                                               gCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCatgcccgtaacggccaggacccggcgtttggccgcggttccacgccgttcaaccgcaagcagggtgacc                                                                              <  7:18820‑M1/149‑70 (MQ=255)                                                                 tttACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGaa                                                                            <  3:162319/149‑1 (MQ=255)                                                                   tACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCatgcccgtaacggccaggacccggcgtttggccgcggttccacgccgttcaaccgcaagcagggtgaccca                                                                            <  3:28835‑M1/147‑72 (MQ=255)                                                                      tttCACCGCATAGAACGGCCCGCGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAg                                                                       >  4:242269/1‑149 (MQ=255)                                                                         cACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTg                                                                     <  6:266590/148‑1 (MQ=255)                                                                           ccGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGAcc                                                                  >  3:249786/1‑149 (MQ=255)                                                                           ccGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGAcc                                                                  <  1:99957/149‑1 (MQ=255)                                                                            cGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCg                                                                 >  5:227557/1‑149 (MQ=255)                                                                                        cccGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGcc                                                     >  1:138150/1‑149 (MQ=255)                                                                                        cccGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGcc                                                     >  2:244755/1‑149 (MQ=255)                                                                                         ccGTGCTCGATGGGCGCCACGCAAGGGTTAGGGGCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGTACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGccc                                                    <  2:240170/149‑1 (MQ=255)                                                                                               tCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACgg                                              >  5:42688/1‑149 (MQ=255)                                                                                                  aTGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTc                                           <  2:159806/149‑1 (MQ=255)                                                                                                     ggCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAAt                                        <  1:57637/149‑1 (MQ=255)                                                                                                             gCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAgg                                <  6:40314/149‑1 (MQ=255)                                                                                                                  ggTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTgg                           <  3:242269/149‑1 (MQ=255)                                                                                                                  ggTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTGGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTgg                           <  8:115067/149‑1 (MQ=255)                                                                                                                       gggCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAg                      >  1:197289/1‑149 (MQ=255)                                                                                                                                tgCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGa              <  1:244755/148‑1 (MQ=255)                                                                                                                                tgCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAg             >  4:134276/1‑149 (MQ=255)                                                                                                                                  cTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGc            <  6:42688/148‑1 (MQ=255)                                                                                                                                   tgtgGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCg           >  1:163814/1‑148 (MQ=255)                                                                                                                                     tgGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATgggtgacccacagcacaagggccctaacccttgcgtggcgcccatcgagcacgggccgttctatgcggtgaaagta          <  3:28835‑M2/147‑77 (MQ=255)                                                                                                                                       ggTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATgggtgacccacagcacaagggccctaacccttgcgtggcgcccatcgagcacgggccgttctatgcggtgaaagtaaagc      <  7:18820‑M2/149‑81 (MQ=255)                                                                                                                                           aCCCatgcccgtaacggccaggacccggcgtttggccgcggttccacgccgttcaaccgcaagcagggtgacccacagcacaagggccctaacccttgcgtggcgcccatcgagcacgggccgttctatgcggtgaaagtaaagcccgg  >  7:153908‑M1/1‑4 (MQ=255)                                                                                                                                             ccTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGAcc                                                                  <  3:257183/83‑1 (MQ=255)                                                                                                                                             ccTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGAcc                                                                  >  4:257183/1‑83 (MQ=255)                                                                                                                                              |                                                                                                                                                  CTCATCCAGTACACGGGCATTGCCGTCGGTGCGCAACCCGGCAAAGGTGCCAAAACAGCCGGGCTTTACTTTCACCGCATAGAACGGCCCGTGCTCGATGGGCGCCACGCAAGGGTTAGGGCCCTTGTGCTGTGGGTCACCCTGCTTGCGGTTGAACGGCGTGGAACCGCGGCCAAACGCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGC  >  NC_002947/2972317‑2972603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.