New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2986914	33 (0.780)	3 (0.080)	3/242	NT	12.0%	coding (1485/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2986958	13 (0.330)					coding (1441/2991 nt)	PP_2612	membrane protein

GCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCC  >  NC_002947/2986773‑2987060                                                                                                                                               |                                                                                                                                                   gCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAgg                                                                                                                                             >  8:231489/1‑149 (MQ=255)   cATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTg                                                                                                                                           >  3:77678/1‑149 (MQ=255)     ttgctggcATCCCATCGGGTCTGCCCGGGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGACGCGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGc                                                                                                                                          <  1:192196/147‑1 (MQ=255)       gctggcATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGa                                                                                                                                       >  6:92496/1‑149 (MQ=40)             aTCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAAt                                                                                                                                 <  5:153058/149‑1 (MQ=39)                 cATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGc                                                                                                                             >  5:138624/1‑149 (MQ=39)                  aTCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCt                                                                                                                            >  2:202256/1‑149 (MQ=39)                     gggTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCttt                                                                                                                          <  7:231489/148‑1 (MQ=39)                       gTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTCCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTc                                                                                                                       <  1:202256/149‑1 (MQ=255)                            cccGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTg                                                                                                                   <  5:80944/148‑1 (MQ=39)                             ccGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGaa                                                                                                                 >  2:115903/1‑149 (MQ=39)                              cgcgCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGATGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGGCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAAc                                                                                                                <  8:9516/149‑1 (MQ=255)                               gcgcAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGttcaacccgttcaaggacaaagccgattcgatcggca                                                                                                               >  3:191248‑M1/1‑112 (MQ=255)                                 gcAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACggg                                                                                                             <  3:154807/149‑1 (MQ=39)                                   aGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGtt                                                                                                           <  4:201647/149‑1 (MQ=39)                                     tCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTg                                                                                                          >  2:178497/1‑148 (MQ=38)                                     tCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGAGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTGGCTCGGGTTGa                                                                                                         >  8:219738/1‑149 (MQ=255)                                         ttGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcgg                                                                                                     <  2:178678‑M2/149‑4 (MQ=255)                                              caccacGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcggcgcc                                                                                                 <  6:209008‑M2/148‑8 (MQ=255)                                                ccacGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagc                                                                                              <  4:191248‑M1/149‑55 (MQ=255)                                                 cacGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAgg                                                                                             >  5:18297/1‑149 (MQ=37)                                                 cacGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAgg                                                                                             >  5:202303/1‑149 (MQ=37)                                                  acGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagcga                                                                                            <  8:237648‑M1/149‑57 (MQ=255)                                                           aCCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCt                                                                                                                            >  6:246304/1‑108 (MQ=35)                                                           aCCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCt                                                                                                                            <  5:246304/108‑1 (MQ=35)                                                               aCTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCggg                                                                               <  5:209008/149‑1 (MQ=34)                                                               aCTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCggg                                                                               >  7:209353/1‑149 (MQ=34)                                                                    gCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTc                                                                          <  5:92496/149‑1 (MQ=34)                                                                        tGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcggcgcc                                                                                                 <  8:211559‑M2/122‑8 (MQ=255)                                                                        tGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcggcgcc                                                                                                 >  7:211559‑M2/1‑115 (MQ=255)                                                                                    tatCCGCCATGGCCGGGAAGCGAC‑CGGCGAGTCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCAt                                                          >  2:216656/1‑149 (MQ=18)                                                                                    tatCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCAt                                                          <  7:214351/149‑1 (MQ=33)                                                                                        cGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGc                                                       <  1:178678/148‑1 (MQ=32)                                                                                         gCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTc                                                     <  1:115903/149‑1 (MQ=32)                                                                                          ccATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTc                                                     >  7:186040/1‑148 (MQ=32)                                                                                           cATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCa                                                   <  6:18297/149‑1 (MQ=32)                                                                                                    gAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTg                                           >  7:247698/1‑148 (MQ=32)                                                                                                        cGAC‑CGGCGAGCCCTTCGATCACGTTGTAGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGTCTGTCGTgg                                                                      >  8:104435/1‑116 (MQ=12)                                                                                                             cGGCGAGCCCTTCGATCTCGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCgg                                  <  4:77678/149‑1 (MQ=17)                                                                                                             cGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCgg                                  <  6:202303/149‑1 (MQ=32)                                                                                                                                    tCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctcaccgcccagtcggtcaataccgt           <  8:237648‑M2/149‑94 (MQ=255)                                                                                                                                      gCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAAcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctcaccgcccagtcggtcaataccgtgg         <  4:191248‑M2/149‑96 (MQ=255)                                                                                                                                         ggCGCCGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctcaccgcccagtcggtcaataccgtggtg       <  6:209008‑M1/148‑142 (MQ=255)                                                                                                                                         ggCGCCGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctca                                 >  7:211559‑M1/1‑7 (MQ=255)                                                                                                                                         ggCGCCGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctca                                 <  8:211559‑M1/122‑116 (MQ=255)                                                                                                                                             ccGttcaacccgttcaaggacaaagccgattcgatcggcaccttgttcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctcaccgcccagtcggtcaataccgtggtgctcaa  <  2:178678‑M1/149‑147 (MQ=255)                                                                                                                                               |                                                                                                                                                   GCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACGGTATTGACCGACTGGGCGGTGAGGTCGGTGATATCCGCCATGGCCGGGAAGCGAC‑CGGCGAGCCCTTCGATCACGTTGTCGCTGGCGCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCC  >  NC_002947/2986773‑2987060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.