New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3292622 =	40 (0.950)	3 (0.080)	3/240	NT	8.7%	coding (1906/3675 nt)	PP_2893	hypothetical protein
	?	NC_002947	3292688 =	26 (0.660)					coding (1972/3675 nt)	PP_2893	hypothetical protein

GCCCAACGCGGTGTAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTGGCCAGCGGCCAGCTCGACTTCGGGGCCCACTGCTG  >  NC_002947/3292475‑3292770                                                                                                                                                    |                                                                                                                                                     gcgcaggcgcggttcgggggccagtcgctggtcgtcgccacacaggcttgcctggccggagcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccg                                                                                                                                                      >  2:260299‑M1/148‑148 (MQ=255)   ccAACGCGGTGTAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGcc                                                                                                                                                   <  8:10221/149‑1 (MQ=255)    caggcgcggttcgggggccagtcgctggtcgtcgccacacaggcttgcctggccggagcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccGGCCt                                                                                                                                                  <  2:149063‑M1/5‑1 (MQ=255)       gcgcggttcgggggccagtcgctggtcgtcgccacacaggcttgcctggccggagcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccGGCCTgg                                                                                                                                                >  4:75336‑M1/142‑148 (MQ=255)           gtgtAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGc                                                                                                                                           <  6:94434/149‑1 (MQ=255)              tAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAg                                                                                                                                        <  6:199215/149‑1 (MQ=255)              tAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAg                                                                                                                                        <  2:195910/149‑1 (MQ=255)                 tCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTAACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGtt                                                                                                                                      >  5:108350/1‑148 (MQ=255)                    aGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAAc                                                                                                                                  <  7:80451/149‑1 (MQ=255)                       tCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACa                                                                                                                                 >  4:15402/1‑147 (MQ=255)                          aGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGt                                                                                                                            >  1:149063/1‑149 (MQ=255)                               aCCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTg                                                                                                                       <  8:88554/149‑1 (MQ=255)                                      ccacacaggcttgcctggccggagcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGc                                                                                                                <  2:97441‑M1/39‑1 (MQ=255)                                             gggTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGac                                                                                                            >  1:185458/1‑146 (MQ=255)                                             gggTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGac                                                                                                            <  2:185458/146‑1 (MQ=255)                                              ggTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggc                                                                                                        <  3:15402/149‑1 (MQ=255)                                                tGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggcca                                                                                                      >  7:135980/1‑149 (MQ=255)                                                    acaGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggccactgg                                                                                                  >  8:252661/1‑149 (MQ=255)                                                     caGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggccactgcc                                                                                                 <  8:135980/149‑3 (MQ=255)                                                          ttGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAAt                                                                                            >  7:166507/1‑149 (MQ=255)                                                             gcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccg                                                                                                                                                      >  3:24629‑M1/88‑88 (MQ=255)                                                             gcgccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccg                                                                                                                                                      <  4:24629‑M1/1‑1 (MQ=255)                                                              gCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGTAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggc                                                                                                        <  6:49228/133‑1 (MQ=255)                                                              gCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGTAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGactggc                                                                                                        >  5:49228/1‑133 (MQ=255)                                                              gCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAg                                                                                        >  3:188131/1‑149 (MQ=255)                                                                ccagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGc                                                                                      >  1:97441‑M1/85‑149 (MQ=255)                                                                 cagcagtgggccccgaagtcgagctggccgctggccagccgctgcaggcgtgcaggcgcctgcaactgccactcctggccaccGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGcc                                                                                     >  6:242194‑M1/84‑149 (MQ=255)                                                                  gTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCg                                                                                    >  8:139572/1‑149 (MQ=255)                                                                   ttGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCgg                                                                                   >  2:17839/1‑149 (MQ=255)                                                                    tGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGt                                                                                  >  6:83914/1‑149 (MQ=255)                                                                     gCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTg                                                                                 >  2:54784/1‑149 (MQ=255)                                                                     gCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTg                                                                                 >  1:71749/1‑149 (MQ=255)                                                                            aaCGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGa                                                                          <  7:139572/149‑1 (MQ=255)                                                                             aCGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAg                                                                         >  7:54774/1‑149 (MQ=255)                                                                               ggCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTg                                                                       >  1:64596/1‑149 (MQ=255)                                                                                 cAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGc                                                                     <  2:64596/149‑1 (MQ=255)                                                                                      gCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTg                                                                >  2:234118/1‑149 (MQ=255)                                                                                                     aGGCCTTGACCCTGGCGCTGGCCGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGGGACTGGCGCGGCCGGCTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGcgcctgcacgc                                                 <  3:5377/149‑1 (MQ=255)                                                                                                     aGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGcgcctgcacgc                                                 <  1:234118/149‑1 (MQ=255)                                                                                                      ggCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGcgcctgcacgcc                                                <  4:51345/149‑1 (MQ=255)                                                                                                               ccTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGc                                       >  4:4709/1‑149 (MQ=255)                                                                                                               ccTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGc                                       <  6:14009/149‑1 (MQ=255)                                                                                                                      cTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTggccag                                <  8:54774/149‑1 (MQ=255)                                                                                                                         gccGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAACGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGTCCGGGGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTggccagc                               <  7:7543/145‑1 (MQ=255)                                                                                                                         gACGGCCCGCAGCTCAAGCTCTACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTggccagc                               <  8:231001/147‑1 (MQ=255)                                                                                                                                          gCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGcgcctgcacgcct                                               >  5:25040/1‑114 (MQ=255)                                                                                                                                          gCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGcgcctgcacgcct                                               <  6:25040/114‑1 (MQ=255)                                                                                                                                          gCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTGGCCAGCGGCCAGCTCGACTTCgggg            <  5:83914/149‑1 (MQ=255)                                                                                                                                              gACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTGGCCAGCGGCCAGCTCGACTTCGGGGCCCa        >  7:8289/1‑149 (MQ=255)                                                                                                                                                ccTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGACTGGCCAGCGGCCAGCTCGACTTCGGGGCCCAct      <  6:108350/149‑1 (MQ=255)                                                                                                                                                    GGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTGGCCAGCGGCCAGCTCGACTTCGGGGCCCActgctg  <  6:211073‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCCCAACGCGGTGTAGTCGAGCTCAAGGCAACCGGTATCCACCTGGGTGACACAGCCTTGGGCACGTTGCAGGCCAACGGCAAGGGCGACATTCGCCAACAGGCCTTGACCCTGGCGCTGGACGGCCCGCAGCTCAAGCTCGACCTTGGCCTGGATGGCCAGTTGAACAAAGGTGACTGGCGCGGCCGACTGGCCACTGGCCGAATCCAGGCCGGTGGCCAGGAGTGGCAGTTGCAGGCGCCTGCACGCCTGCAGCGGCTGGCCAGCGGCCAGCTCGACTTCGGGGCCCACTGCTG  >  NC_002947/3292475‑3292770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.