New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3298402	40 (0.950)	3 (0.070)	3/248	NT	7.4%	coding (619/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	= 3298453	37 (0.910)					coding (670/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ

TGAGTGGGTGCGGCCCATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATG  >  NC_002947/3298254‑3298548                                                                                                                                                     |                                                                                                                                                   tGAGTGGGTGCGGCCCATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCA                                                                                                                                                    <  7:36002‑M1/149‑1 (MQ=255)             gCCCATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGccc                                                                                                                                        <  8:137329/149‑1 (MQ=255)              cccATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCg                                                                                                                                       >  8:53990/1‑149 (MQ=255)              cccATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCAGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCg                                                                                                                                       >  1:213123/1‑149 (MQ=255)               ccATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCgg                                                                                                                                      <  8:52473/149‑1 (MQ=255)               ccATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCgg                                                                                                                                      <  4:140396/149‑1 (MQ=255)                   cagcagCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAgg                                                                                                                                  >  4:247014/1‑149 (MQ=255)                       agcCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCg                                                                                                                              >  6:3008/1‑149 (MQ=255)                         ccAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGt                                                                                                                            >  8:81854/1‑149 (MQ=255)                         ccAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGt                                                                                                                            >  4:138867/1‑149 (MQ=255)                          cAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGtt                                                                                                                           <  5:173165/149‑1 (MQ=255)                           aGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGACAGGAGCGGTTc                                                                                                                          <  6:173240/149‑1 (MQ=255)                            ggATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTcg                                                                                                                         <  7:81854/149‑1 (MQ=255)                                        aCTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGcc                                                                                                                                         <  7:49668/121‑1 (MQ=255)                                        aCTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGcc                                                                                                                                         >  8:49668/1‑121 (MQ=255)                                               cgccgcTGACTGGCCGCGGGCGGTGTGGGGCAGTTGGGCGAGGGGTTGGCCGGGGCGCACCCGCCAACGCTGGCCCGTGCGCAATCGTCCCCGGGCTTTGCCAGCGCGTGGGCCCGGCAGGAGCGGTTCGCCGCGCTCCGCGgcgaacc                                                                                                      <  3:141679/149‑6 (MQ=255)                                                gccgGTTACTGGCCGAGGGCGGTGGCGGGCAGGTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAAt                                                                                                     <  7:99108/149‑1 (MQ=255)                                                           gCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggca                                                                                            >  3:247014‑M2/1‑142 (MQ=255)                                                           gCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGt                                                                                          <  3:138867/149‑1 (MQ=255)                                                            cggagGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCTACCGCCAACGATGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAccgcattgctgccgcgctccgcggcgaaccgctcctggcgggccaacgcgctggcaaag                                                                                         <  2:83537‑M1/147‑60 (MQ=255)                                                             cGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAg                                                                                        <  7:53990/149‑1 (MQ=255)                                                                      tgtCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGc                                                                               >  5:50266/1‑149 (MQ=255)                                                                          gggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGtt                                                                            >  4:82168/1‑148 (MQ=255)                                                                           ggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGtt                                                                            >  1:264246/1‑147 (MQ=255)                                                                           ggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCa                                                                          <  5:3008/149‑1 (MQ=255)                                                                                     cgAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAccgcattgctgccgcgctccgcggcgaaccgctcctgccgggccaacgcgctggca                                                                                            <  1:26064‑M1/121‑57 (MQ=255)                                                                                     cgAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAccgcattgctgccgcgctccgcggcgaaccgctcctgccgggccaacgcgctggca                                                                                            >  2:26064‑M1/1‑65 (MQ=255)                                                                                         gCGTTGGCGGTTGCGCCCCTGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAg                                                                         <  5:240783/136‑1 (MQ=255)                                                                                         gCGTTGGCGGTTGCGCCCCTGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAg                                                                         >  6:240783/1‑136 (MQ=255)                                                                                                 aGGGGCGCAACCGCAAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGc                                                    >  3:92854/1‑149 (MQ=255)                                                                                                     gggcAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCACGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTGAGCCAATGGCCGCGGCCTGTTGCTGGc                                                <  2:213123/147‑1 (MQ=255)                                                                                                           ccGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAAccc                                          >  5:117236/1‑149 (MQ=255)                                                                                                             gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATTGCCGCGGCCTGTTg                                                     >  8:132455/1‑136 (MQ=255)                                                                                                             gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTg                                                     <  7:132455/136‑1 (MQ=255)                                                                                                             gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCg                                         >  5:267795/1‑148 (MQ=255)                                                                                                             gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCg                                         <  6:267795/148‑1 (MQ=255)                                                                                                              ccAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCa                                       >  7:147339/1‑149 (MQ=255)                                                                                                               cAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCAc                                      >  3:225132/1‑149 (MQ=255)                                                                                                                         ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCCCATccacggg                             >  2:6391/1‑143 (MQ=255)                                                                                                                         ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGa                            >  3:137122/1‑149 (MQ=255)                                                                                                                         ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGa                            <  8:147339/149‑1 (MQ=255)                                                                                                                          cGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCCCATccacgggaa                           <  2:264246/149‑8 (MQ=255)                                                                                                                                 aaTCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGggcggc                    <  4:137122/149‑1 (MQ=255)                                                                                                                                          cGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCAGGCGCTTc           >  8:41866/1‑149 (MQ=255)                                                                                                                                             gCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTAc        >  8:99666/1‑149 (MQ=255)                                                                                                                                              cTTTGCCAGCGCGTTGGCCCGCCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccatcgttggcggtagcgcccctgccaacgcctcgacgaactgcccgacaccgccctccg       <  2:83537‑M2/149‑91 (MQ=255)                                                                                                                                                 tGCCAccgcattgctgccgcgctccgcggcgaaccgctcctgccgggccaacgcgctggcaaagcccgctgacgattgcgcacgggccagcgttggcggttgcgcccctgccaacgcctcgacgaactgcccgacaccgccctcggc      >  3:247014‑M1/1‑5 (MQ=255)                                                                                                                                                 tGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccagcgttggcggttgcgcccctgccaacgcctcg                                >  2:26064‑M2/1‑56 (MQ=255)                                                                                                                                                 tGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccagcgttggcggttgcgcccctgccaacgcctcg                                <  1:26064‑M2/121‑66 (MQ=255)                                                                                                                                                  gCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAgtt   >  1:76499/1‑147 (MQ=255)                                                                                                                                                   ccAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATg  >  6:131315/1‑149 (MQ=255)                                                                                                                                                    cAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATg  >  4:107980/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGAGTGGGTGCGGCCCATCAGCAGCCAGGATCTGGTCAAACTGACCCGCCGGTTACTGGCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATG  >  NC_002947/3298254‑3298548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.