New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3298402	40 (0.950)	3 (0.070)	3/248	NT	7.4%	coding (619/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	= 3298453	37 (0.910)					coding (670/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ

GCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGG  >  NC_002947/3298312‑3298598                                                                                                                                              |                                                                                                                                                  gCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggca                                                                                                                                              >  3:247014‑M2/1‑142 (MQ=255) gCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGt                                                                                                                                            <  3:138867/149‑1 (MQ=255)   cGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAg                                                                                                                                          <  7:53990/149‑1 (MQ=255)            tgtCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGc                                                                                                                                 >  5:50266/1‑149 (MQ=255)                gggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGtt                                                                                                                              >  4:82168/1‑148 (MQ=255)                 ggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGtt                                                                                                                              >  1:264246/1‑147 (MQ=255)                 ggCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCa                                                                                                                            <  5:3008/149‑1 (MQ=255)                               gCGTTGGCGGTTGCGCCCCTGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAg                                                                                                                           >  6:240783/1‑136 (MQ=255)                               gCGTTGGCGGTTGCGCCCCTGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAg                                                                                                                           <  5:240783/136‑1 (MQ=255)                                       aGGGGCGCAACCGCAAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGc                                                                                                      >  3:92854/1‑149 (MQ=255)                                           gggcAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCACGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTGAGCCAATGGCCGCGGCCTGTTGCTGGc                                                                                                  <  2:213123/147‑1 (MQ=255)                                                 ccGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAAccc                                                                                            >  5:117236/1‑149 (MQ=255)                                                   gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATTGCCGCGGCCTGTTg                                                                                                       >  8:132455/1‑136 (MQ=255)                                                   gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTg                                                                                                       <  7:132455/136‑1 (MQ=255)                                                   gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCg                                                                                           <  6:267795/148‑1 (MQ=255)                                                   gCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCg                                                                                           >  5:267795/1‑148 (MQ=255)                                                    ccAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCa                                                                                         >  7:147339/1‑149 (MQ=255)                                                     cAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCAc                                                                                        >  3:225132/1‑149 (MQ=255)                                                               ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCCCATccacggg                                                                               >  2:6391/1‑143 (MQ=255)                                                               ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGa                                                                              <  8:147339/149‑1 (MQ=255)                                                               ccGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGa                                                                              >  3:137122/1‑149 (MQ=255)                                                                cGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCCCATccacgggaa                                                                             <  2:264246/149‑8 (MQ=255)                                                                       aaTCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGggcggc                                                                      <  4:137122/149‑1 (MQ=255)                                                                                cGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCAGGCGCTTc                                                             >  8:41866/1‑149 (MQ=255)                                                                                   gCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTAc                                                          >  8:99666/1‑149 (MQ=255)                                                                                    cTTTGCCAGCGCGTTGGCCCGCCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccatcgttggcggtagcgcccctgccaacgcctcgacgaactgcccgacaccgccctccg                                                         <  2:83537‑M2/149‑91 (MQ=255)                                                                                       tGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccagcgttggcggttgcgcccctgccaacgcctcg                                                                                  <  1:26064‑M2/121‑66 (MQ=255)                                                                                       tGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGtggcaaagcccgctgacgattgcgcacgggccagcgttggcggttgcgcccctgccaacgcctcg                                                                                  >  2:26064‑M2/1‑56 (MQ=255)                                                                                        gCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAgtt                                                     >  1:76499/1‑147 (MQ=255)                                                                                         ccAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATg                                                    >  6:131315/1‑149 (MQ=255)                                                                                          cAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATg                                                    >  4:107980/1‑148 (MQ=255)                                                                                                tgtGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGAGGCATCACAGCGGTGGCAGTAGTCTCCCAGCGATCAGCCAATGGCCGCGGCCTGTTGCTGTCCAACCCTCACTTCCCGTTGATTGTCGGCATGCGCTTCTACCAGATGCAACTGa                                             <  4:18583/147‑1 (MQ=255)                                                                                                    gCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCa                                          <  7:124108/148‑1 (MQ=255)                                                                                                                   ttCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTtga                          >  8:48153/1‑149 (MQ=255)                                                                                                                   ttCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTtga                          <  7:48153/149‑1 (MQ=255)                                                                                                                   ttCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTtga                          >  4:186990/1‑149 (MQ=255)                                                                                                                     cgccgcGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTtgatg                        >  3:24117/1‑149 (MQ=255)                                                                                                                              gcgcGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGggcg               <  6:50266/149‑1 (MQ=255)                                                                                                                                 cgGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGggcgcgg            >  8:174621/1‑149 (MQ=255)                                                                                                                                  ggCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCTCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCg                                    <  3:43219/124‑1 (MQ=255)                                                                                                                                  ggCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCTCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCg                                    >  4:43219/1‑124 (MQ=255)                                                                                                                                  ggCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGggcgcggc           <  6:117236/149‑1 (MQ=255)                                                                                                                                        aaTGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTAcc     >  3:253234/1‑149 (MQ=255)                                                                                                                                            cGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCATCTTGATGTGATGGGCGCGGCGCTACCggg  <  5:131315/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  GCCGAGGGCGGTGTCGGGCAGTTCGTCGAGGCGTTGGCAGGGGCGCAACCGCCAACGCTGGCCCGTGCGCAATCGTCAGCGGGCTTTGCCAGCGCGTTGGCCCGGCAGGAGCGGTTCGCCGCGGAGCGCGGCAGCAATGCGGTGGCAGTAGGCGCGCAGCGTTCAGCCAATGGCCGCGGCCTGTTGCTGGCCAACCCGCACTTCCCGTGGATGGGCGGCATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGG  >  NC_002947/3298312‑3298598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.