New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3751094	44 (1.040)	3 (0.070)	3/248	NT	7.2%	coding (2789/2823 nt)	PP_3316	chaperone‑associated ATPase
	?	NC_002947	= 3751175	35 (0.860)					coding (2708/2823 nt)	PP_3316	chaperone‑associated ATPase

ACGCAGTCGCATGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGCTTGAGCTCGC  >  NC_002947/3750955‑3751238                                                                                                                                            |                                                                                                                                                  aCGCAGTCGCATGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGc                                                                                                                                           <  4:197510/148‑1 (MQ=255) aCGCAGTCGCATGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGc                                                                                                                                           >  3:197510/1‑148 (MQ=255)    cAGTCGCATGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCcggc                                                                                                                                       <  3:175344/149‑1 (MQ=255)            tGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAac                                                                                                                               <  3:154744/149‑1 (MQ=255)              cgcgTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCATCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCAATGTCTAGCTCTTTGGCCGGCGCGGCTTGCCGGCGTTCGAacc                                                                                                                              <  2:126405/148‑1 (MQ=255)                 gTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAacccga‑c                                                                                                                         >  2:168631/1‑149 (MQ=255)                     tctcGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAacccga‑cccg                                                                                                                      >  1:10646/1‑148 (MQ=255)                       tcGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCAGGCGCGGCTTGCCGGCGGTCGAACCCGT‑CCCGCTc                                                                                                                   >  5:230423/1‑149 (MQ=255)                             tCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCtt                                                                                                             >  6:18230/1‑149 (MQ=255)                                 cGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTgtcg                                                                                                         >  2:52892/1‑149 (MQ=255)                                      tCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTcc                                                                                                      <  2:201358/147‑1 (MQ=255)                                        cTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAgc                                                                                                  >  2:266101/1‑149 (MQ=255)                                               ccTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATg                                                                                           >  7:30100/1‑149 (MQ=255)                                                cTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATgg                                                                                          <  3:224860/149‑1 (MQ=255)                                                   aCCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGc                                                                                        <  7:156374/148‑1 (MQ=255)                                                    ccTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGACCCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCg                                                                                       <  1:168631/149‑1 (MQ=255)                                                      tctTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGa                                                                                    >  2:16992/1‑149 (MQ=255)                                                        ttCAGCATCAAGATCATTGCAACGAGCAACCGCAGCCTTCTGCCTGCGCTTCACGCATTTTCAGTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGa                                                                                    <  4:47949/147‑1 (MQ=255)                                                          cagcagCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGAt                                                                                   <  1:52892/146‑1 (MQ=255)                                                          cagcagCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCa                                                                                 <  8:30100/148‑1 (MQ=255)                                                             cagcaAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCcggcgg                                                                                                                                     <  3:104328/94‑1 (MQ=255)                                                             cagcaAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCcggcgg                                                                                                                                     >  4:104328/1‑94 (MQ=255)                                                               gcaAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCa                                                                                 >  6:150375/1‑143 (MQ=255)                                                               gcaAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCa                                                                                 <  5:150375/143‑1 (MQ=255)                                                                       aTTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATgcc                                                                   <  1:16992/149‑1 (MQ=255)                                                                            aaCGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTg                                                                                     <  6:28395/126‑1 (MQ=255)                                                                            aaCGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTg                                                                                     >  5:28395/1‑126 (MQ=255)                                                                             aCGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCcgcc                                                             <  3:66123‑M2/149‑5 (MQ=255)                                                                               gagaAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGgcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcgccgg                                                            <  6:58972‑M1/149‑88 (MQ=255)                                                                               gagaAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGa                                                           <  4:98118/149‑1 (MQ=255)                                                                               gagaAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGa                                                           <  4:66123/149‑1 (MQ=255)                                                                                 gaAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAg                                                          >  4:262247/1‑148 (MQ=255)                                                                                    aCCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTAGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCAtt                                                      >  5:38294/1‑149 (MQ=255)                                                                                     ccGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGTGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCc                                                                <  5:124409‑M2/138‑2 (MQ=255)                                                                                     ccGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGTGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCc                                                                >  6:124409‑M2/1‑137 (MQ=255)                                                                                      cGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGgcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcgccggccaaag                                                      >  6:262983‑M1/1‑55 (MQ=255)                                                                                      cGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGgcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcgccggccaaag                                                      <  5:262983‑M1/148‑94 (MQ=255)                                                                                           ccTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTg                                               <  7:97717/149‑1 (MQ=255)                                                                                                   cTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGcc                                       >  3:211251/1‑149 (MQ=255)                                                                                                      cgcTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGtc                                    <  5:18230/149‑1 (MQ=255)                                                                                                         ttCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTcc                                 <  3:41989/149‑1 (MQ=255)                                                                                                                aTTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCAc                                                  >  4:716/1‑125 (MQ=255)                                                                                                                aTTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCAc                                                  <  3:716/125‑1 (MQ=255)                                                                                                                              gCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGc            <  6:38294/149‑1 (MQ=255)                                                                                                                                 ctTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCcgccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcg          <  5:262983‑M2/148‑56 (MQ=255)                                                                                                                                 ctTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCcgccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcg          >  6:262983‑M2/1‑93 (MQ=255)                                                                                                                                  tttGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGCTTg         >  8:92684/1‑148 (MQ=255)                                                                                                                                      gCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTc              <  6:84053/139‑1 (MQ=255)                                                                                                                                      gCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTc              >  5:84053/1‑139 (MQ=255)                                                                                                                                       ccGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCcgccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcggtttctc   <  6:58972‑M2/149‑63 (MQ=255)                                                                                                                                       ccGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAg                >  4:219536/1‑136 (MQ=255)                                                                                                                                       ccGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAg                <  3:219536/136‑1 (MQ=255)                                                                                                                                       ccGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGCTTGAGCTcg   >  8:102638/1‑149 (MQ=255)                                                                                                                                        cGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGCTTGAGCTcgc  <  7:92684/149‑1 (MQ=255)                                                                                                                                         ggcggcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcgccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcggtttctcgt  <  3:66123‑M1/149‑146 (MQ=255)                                                                                                                                            ggcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcaccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcgg          >  6:124409‑M1/1‑1 (MQ=255)                                                                                                                                            ggcggcattggcaagggtgatcacgcccatgtgcgctgggacgacaaggcggagcgggtcgggttcgaccgccggcaagccgcaccggccaaagagctcgacagtgaaaatgcgtgaagcgcaggccgaaggctgcgg          <  5:124409‑M1/138‑138 (MQ=255)                                                                                                                                            |                                                                                                                                                  ACGCAGTCGCATGCGCGTGGTCTCGGGCTCATCGCTGTCCTTCATGCCTCACCTCTTCAGCAGCAAGATCATTGCAACGAGAAACCGCAGCCTTCGGCCTGCGCTTCACGCATTTTCACTGTCGAGCTCTTTGGCCGGCGCGGCTTGCCGGCGGTCGAACCCGA‑CCCGCTCCGCCTTGTCGTCCCAGCGCACATGGGCGTGATCACCCTTGCCAATGCCGCCGCCGAGCATTTCACGTGCCAGTGCCGTCTCCAGCTCGCTGCGGATCAGTCGCTTGAGCTCGC  >  NC_002947/3750955‑3751238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.