New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3785603	39 (0.920)	4 (0.100)	3/244	NT	9.7%	coding (798/1146 nt)	PP_3348	GGDEF domain‑containing protein
	?	NC_002947	= 3785643	38 (0.950)					coding (838/1146 nt)	PP_3348	GGDEF domain‑containing protein

ACCGGCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGG  >  NC_002947/3785457‑3785750                                                                                                                                                   |                                                                                                                                                    aCCGGCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGa                                                                                                                                                   >  8:30491/1‑149 (MQ=255) aCCGGCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGa                                                                                                                                                   >  8:69351/1‑149 (MQ=255)  ccGGCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGAc                                                                                                                                                  <  7:150348/149‑1 (MQ=255)     gCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAg                                                                                                                                               >  4:116160/1‑149 (MQ=255)               ccGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAgc                                                                                                                                     <  3:137282/149‑1 (MQ=255)                    gTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATc                                                                                                                                >  4:192950/1‑149 (MQ=255)                      gCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCgg                                                                                                                              >  2:265661/1‑149 (MQ=255)                       cTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGt                                                                                                                             <  7:246868/149‑1 (MQ=255)                          ttttCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGCCCATTTCAAACAGATCAACGCCACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTg                                                                                                                            >  3:149388/1‑147 (MQ=255)                               gACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGAt                                                                                                                     >  7:93447/1‑149 (MQ=255)                               gACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGAt                                                                                                                     >  5:210473/1‑149 (MQ=255)                                     gCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGc                                                                                                               >  2:11077/1‑149 (MQ=255)                                     gCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGc                                                                                                               >  6:73252/1‑149 (MQ=255)                                       ttCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGc                                                                                                               >  3:197171/1‑147 (MQ=255)                                       ttCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCa                                                                                                             <  3:192950/149‑1 (MQ=255)                                          ggCGCAGCACGGCCGGTGCAGGGCTGCGGGTACATTCCTGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgc                                                                                                           >  4:197171‑M2/1‑146 (MQ=255)                                              cagcaCGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                      >  1:65033‑M2/1‑142 (MQ=255)                                                gcaCGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTg                                                                                                    <  7:179051/149‑1 (MQ=255)                                                    gTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgc                                                                                                <  5:137708‑M1/149‑54 (MQ=255)                                                    gTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgc                                                                                                <  7:3149‑M1/149‑54 (MQ=255)                                                     tCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcat                                                                                                  <  1:116480‑M1/146‑52 (MQ=255)                                                     tCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcat                                                                                                  >  2:116480‑M1/1‑95 (MQ=255)                                                         gTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACa                                                                                           >  5:52462/1‑149 (MQ=255)                                                         gTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACa                                                                                           >  3:212503/1‑149 (MQ=255)                                                          tGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                      <  4:249087‑M2/137‑8 (MQ=255)                                                          tGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                      >  3:249087‑M2/1‑130 (MQ=255)                                                             aGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGc                                                                                       <  6:52462/149‑1 (MQ=255)                                                               ggATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCg                                                                                     <  3:251125/149‑1 (MQ=255)                                                                gATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCgg                                                                                    <  3:116160/149‑1 (MQ=255)                                                                     gggTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCa                                                                                                                          >  6:77790/1‑106 (MQ=255)                                                                     gggTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCa                                                                                                                          <  5:77790/106‑1 (MQ=255)                                                                             tCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGggcggc                                                                       >  1:58294/1‑149 (MQ=255)                                                                             tCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGggcggc                                                                       >  5:19354/1‑149 (MQ=255)                                                                                  gCCGTGGTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCgagga                                                                  <  6:210473/149‑1 (MQ=255)                                                                                   ccGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCgaggag                                                                 <  4:212503/149‑1 (MQ=255)                                                                                          gATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGcc                                                           <  2:58294/148‑1 (MQ=255)                                                                                                 gACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCctgct                                                   >  5:116382/1‑149 (MQ=255)                                                                                                            tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGcc                                                <  8:78588/141‑1 (MQ=255)                                                                                                            tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATAcgc                                        >  1:27847/1‑149 (MQ=255)                                                                                                            tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGCTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTACGCCATCCTGCTGcc                                                >  7:78588/1‑141 (MQ=255)                                                                                                                 aaCAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATAcgccgc                                     >  8:101019/1‑147 (MQ=255)                                                                                                                    cgATCAACGACCCGGTCGGGCCTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGac                                <  4:149388/148‑1 (MQ=255)                                                                                                                          aCGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACCACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCg                          >  4:200721/1‑149 (MQ=255)                                                                                                                              cacGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGa                         >  5:226942/1‑146 (MQ=255)                                                                                                                               acGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCGCAATACGCCGCCAGACACGGCGATTGa                     <  1:12020/149‑1 (MQ=255)                                                                                                                               acGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGa                     <  6:226942/149‑1 (MQ=255)                                                                                                                                 gTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAgg                   >  2:182159/1‑149 (MQ=255)                                                                                                                                 gTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAgg                   >  5:100435/1‑149 (MQ=255)                                                                                                                                    cGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCTCAATACGCCGCCAGACACGGCGATTGAGGTTg                >  8:75290/1‑149 (MQ=255)                                                                                                                                       gCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccggac             <  5:137708‑M2/149‑97 (MQ=255)                                                                                                                                       gCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccggac             <  7:3149‑M2/149‑97 (MQ=255)                                                                                                                                         aTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccgga              <  1:116480‑M2/146‑96 (MQ=255)                                                                                                                                         aTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccgga              >  2:116480‑M2/1‑51 (MQ=255)                                                                                                                                          tGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAgc          <  5:4265/149‑1 (MQ=255)                                                                                                                                             cGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccggacgtgctg       >  1:65033‑M1/1‑7 (MQ=255)                                                                                                                                             cGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgca                   <  4:249087‑M1/137‑131 (MQ=255)                                                                                                                                             cGCAGGCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgca                   >  3:249087‑M1/1‑7 (MQ=255)                                                                                                                                                  gCtggcactgatcgctgcaccgatgcgctgcagcacctggtcgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccaggaatgtacccgcagccctgcaccggccgtgctgcgcc   >  4:197171‑M1/1‑2 (MQ=255)                                                                                                                                                  gCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCTCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCgg  <  7:75290/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACCGGCCTGAACAACCGACGTGCTTTTTTCGACAATGCTTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGG  >  NC_002947/3785457‑3785750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.