New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3785603	39 (0.920)	4 (0.100)	3/244	NT	9.7%	coding (798/1146 nt)	PP_3348	GGDEF domain‑containing protein
	?	NC_002947	= 3785643	38 (0.950)					coding (838/1146 nt)	PP_3348	GGDEF domain‑containing protein

TTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAATGATGAACACCCG  >  NC_002947/3785495‑3785789                                                                                                                                                     |                                                                                                                                                   ttCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCa                                                                                                                                                    <  3:192950/149‑1 (MQ=255)    ggCGCAGCACGGCCGGTGCAGGGCTGCGGGTACATTCCTGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgc                                                                                                                                                  >  4:197171‑M2/1‑146 (MQ=255)        cagcaCGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                                                             >  1:65033‑M2/1‑142 (MQ=255)          gcaCGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTg                                                                                                                                           <  7:179051/149‑1 (MQ=255)                   gTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACa                                                                                                                                  >  3:212503/1‑149 (MQ=255)                   gTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACa                                                                                                                                  >  5:52462/1‑149 (MQ=255)                    tGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                                                             <  4:249087‑M2/137‑8 (MQ=255)                    tGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcg                                                                                                                                             >  3:249087‑M2/1‑130 (MQ=255)                       aGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGc                                                                                                                              <  6:52462/149‑1 (MQ=255)                         ggATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCg                                                                                                                            <  3:251125/149‑1 (MQ=255)                          gATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCgg                                                                                                                           <  3:116160/149‑1 (MQ=255)                                       tCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGggcggc                                                                                                              >  1:58294/1‑149 (MQ=255)                                       tCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGggcggc                                                                                                              >  5:19354/1‑149 (MQ=255)                                            gCCGTGGTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCgagga                                                                                                         <  6:210473/149‑1 (MQ=255)                                             ccGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCgaggag                                                                                                        <  4:212503/149‑1 (MQ=255)                                                    gATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGcc                                                                                                  <  2:58294/148‑1 (MQ=255)                                                           gACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCctgct                                                                                          >  5:116382/1‑149 (MQ=255)                                                                      tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGcc                                                                                       <  8:78588/141‑1 (MQ=255)                                                                      tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATAcgc                                                                               >  1:27847/1‑149 (MQ=255)                                                                      tttCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGCTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTACGCCATCCTGCTGcc                                                                                       >  7:78588/1‑141 (MQ=255)                                                                           aaCAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATAcgccgc                                                                            >  8:101019/1‑147 (MQ=255)                                                                              cgATCAACGACCCGGTCGGGCCTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGac                                                                       <  4:149388/148‑1 (MQ=255)                                                                                    aCGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACCACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCg                                                                 >  4:200721/1‑149 (MQ=255)                                                                                        cacGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGa                                                                >  5:226942/1‑146 (MQ=255)                                                                                         acGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCGCAATACGCCGCCAGACACGGCGATTGa                                                            <  1:12020/149‑1 (MQ=255)                                                                                         acGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGa                                                            <  6:226942/149‑1 (MQ=255)                                                                                           gTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAgg                                                          >  5:100435/1‑149 (MQ=255)                                                                                           gTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAgg                                                          >  2:182159/1‑149 (MQ=255)                                                                                              cGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCTCAATACGCCGCCAGACACGGCGATTGAGGTTg                                                       >  8:75290/1‑149 (MQ=255)                                                                                                 gCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccggac                                                    <  7:3149‑M2/149‑97 (MQ=255)                                                                                                 gCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccggac                                                    <  5:137708‑M2/149‑97 (MQ=255)                                                                                                   aTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccgga                                                     <  1:116480‑M2/146‑96 (MQ=255)                                                                                                   aTGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAgcctgcggcatgcccgaacgtgtcgttgatctgtttgaaatggtcgacgtccagcatcaacacggccatgaatgtacccgcatccctgcaccgga                                                     >  2:116480‑M2/1‑51 (MQ=255)                                                                                                    tGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAgc                                                 <  5:4265/149‑1 (MQ=255)                                                                                                            gCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCTCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCgg                                         <  7:75290/149‑1 (MQ=255)                                                                                                                ccAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGccc                                     <  5:73252/149‑1 (MQ=255)                                                                                                                     tgctgcAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGa                                  >  8:34372/1‑147 (MQ=255)                                                                                                                     tgctgcAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATa                                <  7:101019/149‑1 (MQ=255)                                                                                                                          cAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCa                            >  3:241528/1‑148 (MQ=255)                                                                                                                             cgcATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACt                        <  4:241528/149‑1 (MQ=255)                                                                                                                               cATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGc                      <  3:200721/149‑1 (MQ=255)                                                                                                                                aTCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCg                     <  8:93447/149‑1 (MQ=255)                                                                                                                                aTCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCg                     <  7:69351/149‑1 (MQ=255)                                                                                                                                   ggTGCAGCGATCAGTGCCAGCCTTCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCgtgt                  <  7:34372/149‑1 (MQ=255)                                                                                                                                    gTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCgtgt                  >  2:202829/1‑148 (MQ=255)                                                                                                                                        aGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAatg             <  6:116382/149‑1 (MQ=255)                                                                                                                                        aGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAat              >  2:154188/1‑148 (MQ=255)                                                                                                                                        aGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAat              >  6:53272/1‑148 (MQ=255)                                                                                                                                                   ccAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAATGATGAACACCCg  <  1:11077/149‑1 (MQ=255)                                                                                                                                                    cAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCgg                                         >  2:208760/1‑109 (MQ=255)                                                                                                                                                    cAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCgg                                         <  1:208760/109‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTCGGCGCAGCACGTCCGGTGCAGGGATGCGGGTACATTCATGGCCGTGTTGATGCTGGACGTCGACCATTTCAAACAGATCAACGACACGTTCGGGCATGCCGCAGGCGACCAGGTGCTGCAGCGCATCGGTGCAGCGATCAGTGCCAGCCTGCGTGACAACGACATTGCCGGCAGGCTGGGCGGCGAGGAGTTCGCCATCCTGCTGCCCAATACGCCGCCAGACACGGCGATTGAGGTTGCCGAGCGCCTGCGGGCCCTGATAGCCAAACTGCGTGTGAATGATGAACACCCG  >  NC_002947/3785495‑3785789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.