New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3989295	40 (0.950)	5 (0.120)	5/246	NT	12.3%	coding (1813/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3989343	33 (0.820)					coding (1861/2085 nt)	oplA	5‑oxoprolinase A

AGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCT  >  NC_002947/3989152‑3989440                                                                                                                                                |                                                                                                                                                  aGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATc                                                                                                                                              <  4:264439/149‑1 (MQ=255)     cAGTGTGGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGc                                                                                                                                           <  3:36825/148‑1 (MQ=255)     cAGTGTGGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGc                                                                                                                                           >  4:36825/1‑148 (MQ=255)      aGTGTGGACCTGCAGCAGCACAGCCTGGACGAGCCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCa                                                                                                                                         >  1:33088/1‑149 (MQ=255)      aGTGTGGACCTGCAGCAGCACAGCCTGGACGAGCCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCa                                                                                                                                         >  1:37095/1‑149 (MQ=255)        tgtgGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCAcc                                                                                                                                       <  6:50255/149‑1 (MQ=255)                 gcagcagcaCAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTAATCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCAcgcc                                                                                                                              >  8:34357/1‑149 (MQ=255)                     cagcaCAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCAcgcccgcc                                                                                                                          >  5:47067/1‑149 (MQ=255)                      agcaCAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCccgccg                                                                                                                         <  1:18357/149‑1 (MQ=255)                         acaGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCaa                                                                                                                      >  6:56113/1‑149 (MQ=255)                         acaGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCaa                                                                                                                      >  4:68787/1‑149 (MQ=255)                             ccTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAAccc                                                                                                                   >  4:112100/1‑148 (MQ=255)                             ccTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTCGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAAccct                                                                                                                  >  8:106778/1‑148 (MQ=255)                              cTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAAccc                                                                                                                   >  7:15755/1‑147 (MQ=255)                                     aGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAg                                                                                                          <  6:47067/149‑1 (MQ=255)                                       gCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAggg                                                                                                        >  4:231564/1‑149 (MQ=255)                                                gCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGccggcccctgcagctcgggttgcggcgggcgtggcaggtggccgatcaccga                                                                                               <  8:62797‑M1/149‑53 (MQ=255)                                                     gcTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGccggcccctgcagctcgggttgcggcgggcgtggcaggtggccgatcaccgagc                                                                                             >  1:236781‑M1/1‑92 (MQ=255)                                                     gcTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGccggcccctgcagctcgggttgcggcgggcgtggcaggtggccgatcaccgagc                                                                                             <  2:236781‑M1/146‑55 (MQ=255)                                                       tGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGcccccc                                                                                        <  8:15755/149‑1 (MQ=255)                                                            aGCCGGTTCCAAATCCGGCACGATACCATGTACTAGTAAAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGATTGCTCGGTGTTCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGcccc                                                                                   <  2:232260/149‑1 (MQ=255)                                                              ccGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCa                                                                                 >  4:208880/1‑149 (MQ=255)                                                                 cTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACcg                                                                              >  6:100687/1‑149 (MQ=255)                                                                               aCCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGccggcccctgcagctcgggttgcggcgggcgtggcaggtggccgatcaccgag                                                                                              <  8:242076‑M1/119‑54 (MQ=255)                                                                               aCCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGccggcccctgcagctcgggttgcggcgggcgtggcaggtggccgatcaccgag                                                                                              >  7:242076‑M1/1‑66 (MQ=255)                                                                                ccAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGcc                                                               <  2:37095/149‑1 (MQ=255)                                                                                ccAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGcc                                                               <  2:33088/149‑1 (MQ=255)                                                                                    aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGggccgg                                                                                                   <  7:229670/109‑1 (MQ=255)                                                                                    aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGggccgg                                                                                                   >  8:229670/1‑109 (MQ=255)                                                                                    aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGAt                                                           <  3:68787/149‑1 (MQ=255)                                                                                             gagTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCAAACCGTCCGCCCGATGCAGTTCAg                                                  >  8:237791/3‑149 (MQ=255)                                                                                               gTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAg                                                                                                                <  8:136079/85‑1 (MQ=255)                                                                                               gTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAg                                                                                                                >  7:136079/1‑85 (MQ=255)                                                                                               gTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTg                                                >  4:141396/1‑149 (MQ=255)                                                                                                   aGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTTCCGa                                            >  2:78840/1‑149 (MQ=255)                                                                                                   aGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGa                                            <  3:208880/149‑1 (MQ=255)                                                                                                       aaCCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGt                                        <  7:237791/149‑1 (MQ=255)                                                                                                              ccgCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACcg                                                                              <  2:133382/102‑1 (MQ=255)                                                                                                                     gTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCcac                          <  3:231564/149‑1 (MQ=255)                                                                                                                         aGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCg                      <  5:56113/149‑1 (MQ=255)                                                                                                                                gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTc                                                    <  5:53694/112‑1 (MQ=255)                                                                                                                                gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATgg                                  >  6:124949/1‑130 (MQ=255)                                                                                                                                gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATgg                                  <  5:124949/130‑1 (MQ=255)                                                                                                                                   ccTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCCAGCACCCCCCCCCCCCCCCGCAATCCGTCCGCCCGCTGGTGTTGAATGGCGCCCGTGAAATGCAGCCCACCCCGGTGTTCAAcc            >  4:113474/1‑148 (MQ=255)                                                                                                                                    cTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCAAGCCGTCCGCCCGATGCGGTTCAGTGCCGACGGTGAATGGCAGCCCCCACCGGTGttacaag            >  4:152171/1‑143 (MQ=255)                                                                                                                                    cTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACg            <  3:152171/148‑1 (MQ=255)                                                                                                                                           gCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagc       >  1:236781‑M2/1‑54 (MQ=255)                                                                                                                                           gCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagc       <  2:236781‑M2/146‑93 (MQ=255)                                                                                                                                            cTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggt                                 <  8:242076‑M2/119‑67 (MQ=255)                                                                                                                                            cTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggt                                 >  7:242076‑M2/1‑53 (MQ=255)                                                                                                                                             tCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagcgcggc  <  8:62797‑M2/149‑98 (MQ=255)                                                                                                                                             tCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCCATCCGTCCGCCCGATGCTGTTCAGTGCCGCCGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCt  >  3:213703/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  AGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGAGGCAGGGCTGGCCGCGCTGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCAGGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCT  >  NC_002947/3989152‑3989440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.